hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15093614/chunk_1/iprscan-20080502-15093614.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1871 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 658.4 5.1e-195 21 PF00096.16.fs Zinc finger, C2H2 type 637.5 1e-188 24 PF01096.9.fs Transcription factor S-II (TFIIS) 93.0 4.3e-28 20 PF01286.9.fs XPA protein N-terminal 66.0 4.8e-18 16 PF07754.2.fs Domain of unknown function (DUF1610) 32.9 8.4e-08 16 PF07754.2.ls Domain of unknown function (DUF1610) 26.4 9.3e-05 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 1/21 141 163 .. 1 24 [] 38.1 2.8e-08 PF00096.16.fs 2/24 141 163 .. 1 24 [] 36.1 9.5e-08 PF00096.16.fs 3/24 169 191 .. 1 24 [] 29.7 3.7e-06 PF00096.16.ls 2/21 169 191 .. 1 24 [] 31.7 2.4e-06 PF00096.16.fs 4/24 197 219 .. 1 24 [] 32.7 6.9e-07 PF00096.16.ls 3/21 197 219 .. 1 24 [] 34.6 3.1e-07 PF00096.16.ls 4/21 225 247 .. 1 24 [] 35.7 1.5e-07 PF00096.16.fs 5/24 225 247 .. 1 24 [] 33.7 3.8e-07 PF00096.16.fs 6/24 253 275 .. 1 24 [] 28.5 7.5e-06 PF00096.16.ls 5/21 253 275 .. 1 24 [] 30.5 5.6e-06 PF00096.16.ls 6/21 281 303 .. 1 24 [] 30.0 7.9e-06 PF00096.16.fs 7/24 281 303 .. 1 24 [] 28.0 1e-05 PF00096.16.fs 8/24 309 331 .. 1 24 [] 26.8 2e-05 PF00096.16.ls 7/21 309 331 .. 1 24 [] 28.8 1.8e-05 PF00096.16.fs 9/24 337 359 .. 1 24 [] 27.4 1.4e-05 PF00096.16.ls 8/21 337 359 .. 1 24 [] 29.3 1.2e-05 PF00096.16.ls 9/21 390 412 .. 1 24 [] 20.4 0.0061 PF00096.16.ls 10/21 418 440 .. 1 24 [] 37.0 6e-08 PF00096.16.fs 11/24 418 440 .. 1 24 [] 35.0 1.7e-07 PF00096.16.ls 11/21 446 468 .. 1 24 [] 30.2 6.6e-06 PF00096.16.fs 12/24 446 468 .. 1 24 [] 28.3 8.6e-06 PF00096.16.ls 12/21 474 496 .. 1 24 [] 38.2 2.6e-08 PF00096.16.fs 13/24 474 496 .. 1 24 [] 36.2 8.9e-08 PF00096.16.ls 13/21 502 524 .. 1 24 [] 37.7 3.6e-08 PF00096.16.fs 14/24 502 524 .. 1 24 [] 35.8 1.2e-07 PF00096.16.fs 15/24 530 552 .. 1 24 [] 23.4 0.00014 PF00096.16.ls 14/21 530 552 .. 1 24 [] 25.4 0.00019 PF00096.16.ls 15/21 582 604 .. 1 24 [] 22.7 0.0012 PF00096.16.ls 16/21 610 632 .. 1 24 [] 37.0 6e-08 PF00096.16.fs 17/24 610 632 .. 1 24 [] 35.0 1.7e-07 PF00096.16.fs 18/24 638 660 .. 1 24 [] 32.9 6.1e-07 PF00096.16.ls 17/21 638 660 .. 1 24 [] 34.8 2.7e-07 PF00096.16.ls 18/21 666 688 .. 1 24 [] 38.3 2.5e-08 PF00096.16.fs 19/24 666 688 .. 1 24 [] 36.3 8.5e-08 PF00096.16.fs 20/24 694 716 .. 1 24 [] 30.6 2.2e-06 PF00096.16.ls 19/21 694 716 .. 1 24 [] 32.6 1.3e-06 PF00096.16.ls 20/21 722 744 .. 1 24 [] 24.7 0.00031 PF00096.16.fs 21/24 722 744 .. 1 24 [] 22.7 0.00021 PF00096.16.ls 21/21 775 797 .. 1 24 [] 20.8 0.0046 Alignments of top-scoring domains: PF00096.16.ls: domain 1 of 21, from 141 to 163: score 38.1, E = 2.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+F+r+snL H+r+H KIAA1871 141 YECK-ECEKTFNRSSNLIIHQRIH 163 PF00096.16.fs: domain 2 of 24, from 141 to 163: score 36.1, E = 9.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+F+r+snL H+r+H KIAA1871 141 YECK-ECEKTFNRSSNLIIHQRIH 163 PF00096.16.fs: domain 3 of 24, from 169 to 191: score 29.7, E = 3.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk +++snL H+r+H KIAA1871 169 YVCN-ECGKDSNQSSNLIIHQRIH 191 PF00096.16.ls: domain 2 of 21, from 169 to 191: score 31.7, E = 2.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk +++snL H+r+H KIAA1871 169 YVCN-ECGKDSNQSSNLIIHQRIH 191 PF00096.16.fs: domain 4 of 24, from 197 to 219: score 32.7, E = 6.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+++snL rH+++H KIAA1871 197 YICH-ECGKDFNQSSNLVRHKQIH 219 PF00096.16.ls: domain 3 of 21, from 197 to 219: score 34.6, E = 3.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+++snL rH+++H KIAA1871 197 YICH-ECGKDFNQSSNLVRHKQIH 219 PF00096.16.ls: domain 4 of 21, from 225 to 247: score 35.7, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +snL H+r+H KIAA1871 225 YECK-ECGKAFKGSSNLVLHQRIH 247 PF00096.16.fs: domain 5 of 24, from 225 to 247: score 33.7, E = 3.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +snL H+r+H KIAA1871 225 YECK-ECGKAFKGSSNLVLHQRIH 247 PF00096.16.fs: domain 6 of 24, from 253 to 275: score 28.5, E = 7.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+Fs++ +L H r+H KIAA1871 253 YLCN-KCGKAFSQSTDLIIHHRIH 275 PF00096.16.ls: domain 5 of 21, from 253 to 275: score 30.5, E = 5.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+Fs++ +L H r+H KIAA1871 253 YLCN-KCGKAFSQSTDLIIHHRIH 275 PF00096.16.ls: domain 6 of 21, from 281 to 303: score 30.0, E = 7.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C dCg++Fs++s+L H+r+H KIAA1871 281 YECY-DCGQMFSQSSHLVPHQRIH 303 PF00096.16.fs: domain 7 of 24, from 281 to 303: score 28.0, E = 1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C dCg++Fs++s+L H+r+H KIAA1871 281 YECY-DCGQMFSQSSHLVPHQRIH 303 PF00096.16.fs: domain 8 of 24, from 309 to 331: score 26.8, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* kC+ +C k+F+++s+L+ H+r H KIAA1871 309 LKCN-ECEKAFRQHSHLTEHQRLH 331 PF00096.16.ls: domain 7 of 21, from 309 to 331: score 28.8, E = 1.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* kC+ +C k+F+++s+L+ H+r H KIAA1871 309 LKCN-ECEKAFRQHSHLTEHQRLH 331 PF00096.16.fs: domain 9 of 24, from 337 to 359: score 27.4, E = 1.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+Fs + + +H+r H KIAA1871 337 YECH-RCGKTFSGRTAFLKHQRLH 359 PF00096.16.ls: domain 8 of 21, from 337 to 359: score 29.3, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+Fs + + +H+r H KIAA1871 337 YECH-RCGKTFSGRTAFLKHQRLH 359 PF00096.16.ls: domain 9 of 21, from 390 to 412: score 20.4, E = 0.0061 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg+ F s+L rH+ tH KIAA1871 390 YWCN-QCGRNFQGTSDLIRHQVTH 412 PF00096.16.ls: domain 10 of 21, from 418 to 440: score 37.0, E = 6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s+L rH r+H KIAA1871 418 YECK-ECGKTFNQSSDLLRHHRIH 440 PF00096.16.fs: domain 11 of 24, from 418 to 440: score 35.0, E = 1.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s+L rH r+H KIAA1871 418 YECK-ECGKTFNQSSDLLRHHRIH 440 PF00096.16.ls: domain 11 of 21, from 446 to 468: score 30.2, E = 6.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF+ +s+L rH r+H KIAA1871 446 CVCS-KCGKSFRGSSDLIRHHRVH 468 PF00096.16.fs: domain 12 of 24, from 446 to 468: score 28.3, E = 8.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF+ +s+L rH r+H KIAA1871 446 CVCS-KCGKSFRGSSDLIRHHRVH 468 PF00096.16.ls: domain 12 of 21, from 474 to 496: score 38.2, E = 2.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+L +H+++H KIAA1871 474 YECS-ECGKAFSQRSHLVTHQKIH 496 PF00096.16.fs: domain 13 of 24, from 474 to 496: score 36.2, E = 8.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+L +H+++H KIAA1871 474 YECS-ECGKAFSQRSHLVTHQKIH 496 PF00096.16.ls: domain 13 of 21, from 502 to 524: score 37.7, E = 3.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+r+s L +H+r+H KIAA1871 502 YQCT-ECGKAFRRRSLLIQHRRIH 524 PF00096.16.fs: domain 14 of 24, from 502 to 524: score 35.8, E = 1.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+r+s L +H+r+H KIAA1871 502 YQCT-ECGKAFRRRSLLIQHRRIH 524 PF00096.16.fs: domain 15 of 24, from 530 to 552: score 23.4, E = 0.00014 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F + + +H+ H KIAA1871 530 YECK-ECGKLFIWRTAFLKHQSLH 552 PF00096.16.ls: domain 14 of 21, from 530 to 552: score 25.4, E = 0.00019 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F + + +H+ H KIAA1871 530 YECK-ECGKLFIWRTAFLKHQSLH 552 PF00096.16.ls: domain 15 of 21, from 582 to 604: score 22.7, E = 0.0012 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg++F +s+L rH+ tH KIAA1871 582 YWCN-QCGRAFQGSSDLIRHQVTH 604 PF00096.16.ls: domain 16 of 21, from 610 to 632: score 37.0, E = 6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s+L rH r+H KIAA1871 610 YECK-ECGKTFNQSSDLLRHHRIH 632 PF00096.16.fs: domain 17 of 24, from 610 to 632: score 35.0, E = 1.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s+L rH r+H KIAA1871 610 YECK-ECGKTFNQSSDLLRHHRIH 632 PF00096.16.fs: domain 18 of 24, from 638 to 660: score 32.9, E = 6.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF+ +s+L +H r+H KIAA1871 638 YVCN-KCGKSFRGSSDLIKHHRIH 660 PF00096.16.ls: domain 17 of 21, from 638 to 660: score 34.8, E = 2.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF+ +s+L +H r+H KIAA1871 638 YVCN-KCGKSFRGSSDLIKHHRIH 660 PF00096.16.ls: domain 18 of 21, from 666 to 688: score 38.3, E = 2.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+L +H+++H KIAA1871 666 YECS-ECGKAFSQRSHLATHQKIH 688 PF00096.16.fs: domain 19 of 24, from 666 to 688: score 36.3, E = 8.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+L +H+++H KIAA1871 666 YECS-ECGKAFSQRSHLATHQKIH 688 PF00096.16.fs: domain 20 of 24, from 694 to 716: score 30.6, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg +F+r+s L +H+r H KIAA1871 694 YQCS-ECGNAFRRRSLLIQHRRLH 716 PF00096.16.ls: domain 19 of 21, from 694 to 716: score 32.6, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg +F+r+s L +H+r H KIAA1871 694 YQCS-ECGNAFRRRSLLIQHRRLH 716 PF00096.16.ls: domain 20 of 21, from 722 to 744: score 24.7, E = 0.00031 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F + + +H+r H KIAA1871 722 YECK-ECGKLFMWHTAFLKHQRLH 744 PF00096.16.fs: domain 21 of 24, from 722 to 744: score 22.7, E = 0.00021 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F + + +H+r H KIAA1871 722 YECK-ECGKLFMWHTAFLKHQRLH 744 PF00096.16.ls: domain 21 of 21, from 775 to 797: score 20.8, E = 0.0046 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C ++F +s+L rH+ tH KIAA1871 775 YWCN-QCSRTFQGSSDLIRHQVTH 797 //