hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15030250/chunk_1/iprscan-20080502-15030250.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1867 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07679.6.fs Immunoglobulin I-set domain 91.1 5.9e-26 4 PF00047.15.ls Immunoglobulin domain 88.1 2.5e-23 5 PF00047.15.fs Immunoglobulin domain 83.2 4.6e-22 5 PF07679.6.ls Immunoglobulin I-set domain 71.2 3.1e-18 3 PF07686.7.fs Immunoglobulin V-set domain 41.3 3.6e-11 2 PF07686.7.ls Immunoglobulin V-set domain 44.7 2.9e-10 2 PF08205.3.fs CD80-like C2-set immunoglobulin domain 29.0 1.3e-07 1 PF08205.3.ls CD80-like C2-set immunoglobulin domain 30.9 4e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.ls 1/3 49 146 .. 1 96 [] 8.9 0.0002 PF07686.7.fs 1/2 49 145 .. 1 141 [] 27.4 3e-07 PF07686.7.ls 1/2 49 145 .. 1 141 [] 29.1 1.4e-05 PF00047.15.fs 1/5 63 130 .. 1 65 [] 23.3 1.2e-05 PF00047.15.ls 1/5 63 130 .. 1 65 [] 25.1 0.00023 PF08205.3.ls 1/1 151 239 .. 1 101 [] 30.9 4e-06 PF08205.3.fs 1/1 151 239 .. 1 101 [] 29.0 1.3e-07 PF00047.15.fs 2/5 164 230 .. 1 65 [] 21.2 4.4e-05 PF00047.15.ls 2/5 164 230 .. 1 65 [] 23.2 0.00085 PF07686.7.ls 2/2 335 418 .. 1 141 [] 15.6 0.0013 PF07679.6.ls 2/3 336 417 .. 1 96 [] 61.6 2.4e-15 PF07679.6.fs 3/4 336 417 .. 1 96 [] 59.7 8e-17 PF00047.15.ls 4/5 350 401 .. 1 65 [] 36.2 1e-07 PF00047.15.fs 4/5 350 401 .. 1 65 [] 34.5 1e-08 PF07679.6.ls 3/3 420 517 .. 1 96 [] 0.8 0.00096 Alignments of top-scoring domains: PF07679.6.ls: domain 1 of 3, from 49 to 146: score 8.9, E = 0.0002 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssv... +F+q+p+d++V G+++++ C + + + V W KdG l v+++ KIAA1867 49 YSFSQQPQDQVVVSGQPVTLLCAIPEY-DGFVLWIKDGLALG-Vgrd 93 .l.lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNs.aGeaeas ++ p + v+ ++ sg++ L+I++++ D +Y C+A + a+ KIAA1867 94 lSsYP--QYLVVGNHLSGEHHLKILRAELQDDAVYECQAIQAaIRSRPAR 141 aeLtV<-* ++ V KIAA1867 142 LTVLV 146 PF07686.7.fs: domain 1 of 2, from 49 to 145: score 27.4, E = 3e-07 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss s +q p +v+ G+ vtL C KIAA1867 49 YSFSQQ--PQ------------DQVVVSGQPVTLLCAIP-------- 73 ssgtfsiyWyrq.qppgkgpeliiisyysyystsegngtvgerfkgrvtl + ++ + W +++ +g g l + +++ + vg+ ++g + KIAA1867 74 -EYDGFVLWIKDgLALGVGRDLSS-------YPQ--YLVVGNHLSGEHH- 112 sgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* L+I ++l D ++Y C+ + + rLtVl KIAA1867 113 ----------LKILRAELQDDAVYECQAIQ--AAIRSRPARLTVL 145 PF07686.7.ls: domain 1 of 2, from 49 to 145: score 29.1, E = 1.4e-05 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss s +q p +v+ G+ vtL C KIAA1867 49 YSFSQQ--PQ------------DQVVVSGQPVTLLCAIP-------- 73 ssgtfsiyWyrq.qppgkgpeliiisyysyystsegngtvgerfkgrvtl + ++ + W +++ +g g l + +++ + vg+ ++g + KIAA1867 74 -EYDGFVLWIKDgLALGVGRDLSS-------YPQ--YLVVGNHLSGEHH- 112 sgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* L+I ++l D ++Y C+ + + rLtVl KIAA1867 113 ----------LKILRAELQDDAVYECQAIQ--AAIRSRPARLTVL 145 PF00047.15.fs: domain 1 of 5, from 63 to 130: score 23.3, E = 1.2e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++vtL C d v W ++g l+ g + +s++q KIAA1867 63 GQPVTLLCAI---PEYDGFVLWIKDGLaLGvGRDL-------SSYPQ 99 t...........sLtitnvtpeDggtYtCvv<-* + +++ +++++L i++++ +D+++Y C++ KIAA1867 100 YlvvgnhlsgehHLKILRAELQDDAVYECQA 130 PF00047.15.ls: domain 1 of 5, from 63 to 130: score 25.1, E = 0.00023 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++vtL C d v W ++g l+ g + +s++q KIAA1867 63 GQPVTLLCAI---PEYDGFVLWIKDGLaLGvGRDL-------SSYPQ 99 t...........sLtitnvtpeDggtYtCvv<-* + +++ +++++L i++++ +D+++Y C++ KIAA1867 100 YlvvgnhlsgehHLKILRAELQDDAVYECQA 130 PF08205.3.ls: domain 1 of 1, from 151 to 239: score 30.9, E = 4e-06 *->peIeppasllegeksenlevvatCvlpysagGkPapritWyldgkel p I + +++ + +tC + ++kPa++i+W++ g+ KIAA1867 151 PVILGGPVISLRA---GDPLNLTCH---ADNAKPAASIIWLRKGEVI 191 vpeekteaittsseqdpesglytvtStLklvpsredhgqsltCqvsygal +++t s++ + + +++StL p +gqs++C++ + a KIAA1867 192 ------NGATYSKTLLRDGKRESIVSTLFISPGDVENGQSIVCRATNKAI 235 rgsk<-* g k KIAA1867 236 PGGK 239 PF08205.3.fs: domain 1 of 1, from 151 to 239: score 29.0, E = 1.3e-07 *->peIeppasllegeksenlevvatCvlpysagGkPapritWyldgkel p I + +++ + +tC + ++kPa++i+W++ g+ KIAA1867 151 PVILGGPVISLRA---GDPLNLTCH---ADNAKPAASIIWLRKGEVI 191 vpeekteaittsseqdpesglytvtStLklvpsredhgqsltCqvsygal +++t s++ + + +++StL p +gqs++C++ + a KIAA1867 192 ------NGATYSKTLLRDGKRESIVSTLFISPGDVENGQSIVCRATNKAI 235 rgsk<-* g k KIAA1867 236 PGGK 239 PF00047.15.fs: domain 2 of 5, from 164 to 230: score 21.2, E = 4.4e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++++LtC++ + p +++ Wlr g + + +++++ ++g++ ++ KIAA1867 164 GDPLNLTCHAD-NAKPAASIIWLRKGEvINgATYSKTLLRDGKRESI 209 t.sLtitnvtpeDggtYtCvv<-* ++L i++ + e g + C++ KIAA1867 210 VsTLFISPGDVENGQSIVCRA 230 PF00047.15.ls: domain 2 of 5, from 164 to 230: score 23.2, E = 0.00085 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++++LtC++ + p +++ Wlr g + + +++++ ++g++ ++ KIAA1867 164 GDPLNLTCHAD-NAKPAASIIWLRKGEvINgATYSKTLLRDGKRESI 209 t.sLtitnvtpeDggtYtCvv<-* ++L i++ + e g + C++ KIAA1867 210 VsTLFISPGDVENGQSIVCRA 230 PF07686.7.ls: domain 2 of 2, from 335 to 418: score 15.6, E = 0.0013 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +t+ p s+ v +G +++++C + + KIAA1867 335 GPRMTT-EPQ------------SLLVDLGSDAIFSCAWT----GN-- 362 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++ +i W++ + + g ++++ t KIAA1867 363 --PSLTIVWMK-RGS------------------------GVVLSNEKT-- 383 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* Lt+++++++D G Y C + + + +++LtV KIAA1867 384 ---------LTLKSVRQEDAGKYVCRAVVPRVGAGEREVTLTVN 418 PF07679.6.ls: domain 2 of 3, from 336 to 417: score 61.6, E = 2.4e-15 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd..Gqplssvl P+ t++p+++ V G++a f+C tG+P t+ W K ++G ls+ KIAA1867 336 PRMTTEPQSLLVDLGSDAIFSCAWTGNPSLTIVWMKRgsGVVLSN-- 380 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNs.aGeaeasaeL ++ tLt + v +D+GkY+C+A +++G e +++L KIAA1867 381 ----------EK-----TLTLKSVRQEDAGKYVCRAVVPrVGAGEREVTL 415 tV<-* tV KIAA1867 416 TV 417 PF07679.6.fs: domain 3 of 4, from 336 to 417: score 59.7, E = 8e-17 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd..Gqplssvl P+ t++p+++ V G++a f+C tG+P t+ W K ++G ls+ KIAA1867 336 PRMTTEPQSLLVDLGSDAIFSCAWTGNPSLTIVWMKRgsGVVLSN-- 380 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNs.aGeaeasaeL ++ tLt + v +D+GkY+C+A +++G e +++L KIAA1867 381 ----------EK-----TLTLKSVRQEDAGKYVCRAVVPrVGAGEREVTL 415 tV<-* tV KIAA1867 416 TV 417 PF00047.15.ls: domain 4 of 5, from 350 to 401: score 36.2, E = 1e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ ++C +g+p+ t+ W + g ++ +++ t KIAA1867 350 GSDAIFSCAW--TGNPSLTIVWMKRGSgVVlSNEKT----------- 383 tsLtitnvtpeDggtYtCvv<-* Lt+++v++eD+g Y C++ KIAA1867 384 --LTLKSVRQEDAGKYVCRA 401 PF00047.15.fs: domain 4 of 5, from 350 to 401: score 34.5, E = 1e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ ++C +g+p+ t+ W + g ++ +++ t KIAA1867 350 GSDAIFSCAW--TGNPSLTIVWMKRGSgVVlSNEKT----------- 383 tsLtitnvtpeDggtYtCvv<-* Lt+++v++eD+g Y C++ KIAA1867 384 --LTLKSVRQEDAGKYVCRA 401 PF07679.6.ls: domain 3 of 3, from 420 to 517: score 0.8, E = 0.00096 *->PkFtqkpkdveVqeGesarfeCkVtGtPePt.VsWfKdGqplssvll P ++ + + + Ge C ++ tP+P+++ W + l s KIAA1867 420 PPIISSTQTQHALHGEKGQIKCFIRSTPPPDrIAWSWKENVLES--- 463 psdrfkvtydg....GsgtytLtIsnvqpdD.sGkYtCvAtNsaGeaeas + ++t++ +++ + ++tLtIsn+ ++D +Y C+A Ns+G+++ KIAA1867 464 -GTSGRYTVETisteEGVISTLTISNIVRADfQTIYNCTAWNSFGSDTEI 512 aeLtV<-* ++L+ KIAA1867 513 IRLKE 517 //