hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15011488/chunk_1/iprscan-20080502-15011488.nocrc
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Query sequence: KIAA1866
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00060                                                 115.3    6.8e-30   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00060    1/4       1    78 [.     1    69 []    16.5      2.6
SM00060    2/4     116   199 ..     1    69 []    29.0  0.00066
SM00060    3/4     218   302 ..     1    69 []    31.8  9.5e-05
SM00060    4/4    1545  1628 ..     1    69 []    38.0  1.3e-06

Alignments of top-scoring domains:
SM00060: domain 1 of 4, from 1 to 78: score 16.5, E = 2.6
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP..............
                      P  ++    l+ +            + ++W+pP++  + + ++++  
    KIAA1866     1    PRHVKL---LSTK-----M-----GLKVTWDPPkdatsrpvehynia 34   

                   ......ivgYr........ytltgLkPgaepwteYefrVrAvngndaGeg
                   ++++ + + Y++++ ++ ++ +++ +Pg      Y + ++A+n+   G +
    KIAA1866    35 ygkslkSLKYIkvnaetysFLIEDVEPG----VVYFVLLTAENH--SGVS 78   

                   <-*
                      
    KIAA1866     -     -    

SM00060: domain 2 of 4, from 116 to 199: score 29.0, E = 0.00066
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP..............
                      P  P +   +rv+  +++       +++ W++P  ++ +++  + + 
    KIAA1866   116    PNKPLR---VRVR-SSDD------RLSVAWKAPrlsgaksprrsrgf 152  

                   ivgYr.................ytltgLkPgaepwteYefrVrAvngnda
                    +gY +++++ + ++ +++++++ ++ L       + Y+++++  n+  +
    KIAA1866   153 LLGYGesgrkmnyvpltrdertHEIKKLASE----SVYVVSLQSMNS--Q 196  

                   Geg<-*
                   G++   
    KIAA1866   197 GRS    199  

SM00060: domain 3 of 4, from 218 to 302: score 31.8, E = 9.5e-05
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP..............
                       + P +   ++v+  +s       sv +sW  P  ++ ++   +  +
    KIAA1866   218    LDVPDD---ISVRVMSSQ------SVLVSWVDPvlekqkkvvasrqy 255  

                   ivgYr.................ytltgLkPgaepwteYefrVrAvngnda
                   +v+Yr++++  +++ ++  ++++ +++L P+    t Yef Vr   g   
    KIAA1866   256 TVRYRekgelarwdykqianrrVLIENLIPD----TVYEFAVRISQG--E 299  

                   Geg<-*
                     g   
    KIAA1866   300 RDG    302  

SM00060: domain 4 of 4, from 1545 to 1628: score 38.0, E = 1.3e-06
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP.....ivgYr....
                        +P+n   ++v++v    +s    v + W++  +++ ++gY + + 
    KIAA1866  1545    QHAPRN---ITVVAVEG-CHS---FVIVDWDKAtpgdvVTGYLvysa 1584 

                   ...................ytltgLkPgaepwteYefrVrAvngndaGeg
                   + ++  +++++++ ++++   +++LkP+    t+Y f+V+A n   +G+g
    KIAA1866  1585 syedfirnkwstqassvthLPIENLKPN----TRYYFKVQAQNP--HGYG 1628 

                   <-*
                      
    KIAA1866     -     -    

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