hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14543718/chunk_1/iprscan-20080502-14543718.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1862
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01352.17.fs KRAB box                                        81.3      2e-22   1
PF01352.17.ls KRAB box                                        83.2    7.2e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01352.17.fs   1/1      12    52 ..     1    41 []    81.3    2e-22
PF01352.17.ls   1/1      12    52 ..     1    41 []    83.2  7.2e-22

Alignments of top-scoring domains:
PF01352.17.fs: domain 1 of 1, from 12 to 52: score 81.3, E = 2e-22
                   *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-*
                      +tF+D aV F++EEW+lL++ Qr++YrdVM+ENy++LvS+g   
    KIAA1862    12    ITFKDLAVRFSEEEWRLLEEGQREFYRDVMRENYETLVSVG    52   

PF01352.17.ls: domain 1 of 1, from 12 to 52: score 83.2, E = 7.2e-22
                   *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-*
                      +tF+D aV F++EEW+lL++ Qr++YrdVM+ENy++LvS+g   
    KIAA1862    12    ITFKDLAVRFSEEEWRLLEEGQREFYRDVMRENYETLVSVG    52   

//