hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14454983/chunk_1/iprscan-20080502-14454983.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1857
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00180                                                 105.3    7.1e-27   3
SM00136                                                  51.3    1.1e-15   1
SM00181                                                  28.6    0.00087   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00136    1/1      52   304 ..     1   282 []    51.3  1.1e-15
SM00180    1/3     306   363 ..     1    42 []    34.2  1.8e-05
SM00180    2/3     372   425 ..     1    42 []    32.2  7.2e-05
SM00180    3/3     428   470 ..     1    42 []    38.9  6.8e-07
SM00181    1/1     474   506 ..     1    32 []    28.6  0.00087

Alignments of top-scoring domains:
SM00136: domain 1 of 1, from 52 to 304: score 51.3, E = 1.1e-15
                   *->agrprrCyPefvNlAfgRkrpvtA...tsTCGeqkrprPErYCklvg
                      + +  +C P +  l      +v+++++  TCG +    PEr+C  ++
    KIAA1857    52    TWEFYACQPKVMRLKDY--VKVKVepsGITCGDP----PERFC--SH 90   

                   htaetdliWsllekprteqgkkCdlCDarqptkedprrsHpasnltDlnn
                    + +  ++             +Cd +++         ++Hp++++ D+ +
    KIAA1857    91 ENPYLCSN-------------ECDASNPD--------LAHPPRLMFDKEE 119  

                   pnnptWWQSeplsnGpqyn.nVnLTLdLgkeFevt.YVilkFcPNSPRPe
                    +  t WQS + s++p  + + n+TL+  k  e+t+ V ++F     RP 
    KIAA1857   120 EGLATYWQSITWSRYPS-PlEANITLSWNKTVELTdDVVMTFE--YGRP- 165  

                   slailerStDfGkTWqPwQyySsqdaeCrrtFGrpprga..itkggneqe
                    +++le+S D G+TWqP+Q+y+++   C++ FG+ +r+a++ ++ +  + 
    KIAA1857   166 TVMVLEKSLDNGRTWQPYQFYAED---CMEAFGMSARRArdMSS-SSAHR 211  

                   viCtseysdisPlegGe.iafsl..............LegRPsaedfdnS
                   v+Ct eys+ +++   +++ f ++++     +++ +++++  +    +++
    KIAA1857   212 VLCTEEYSRWAGSKKEKhVRFEVrdrfaifagpdlrnMDNLYTRL--ESA 259  

                   pvLQewvtATdiRvrltRLntplgddlmdvnskeleerDpevtrrYyYaI
                     L e+ t Td+R rl+R++   g+               e++ +Y+YaI
    KIAA1857   260 KGLKEFFTLTDLRMRLLRPAL--GGTYVQ----------RENLYKYFYAI 297  

                   sDlaVGG<-*
                   s+++V G   
    KIAA1857   298 SNIEVIG    304  

SM00180: domain 1 of 3, from 306 to 363: score 34.2, E = 1.8e-05
                   *->CdCnlpppvG..Cdp...tGqClnCkpnttGGrrCdderCapGyy..
                      C Cn    + + C  ++++ qC+ C +nttG + C   +C+ ++ ++
    KIAA1857   306    CKCN---LHAnlCSMregSLQCE-CEHNTTG-PDCG--KCKKNFRtr 345  

                   ................gC<-*
                   + + ++  + ++++++ C   
    KIAA1857   346 swragsylplphgspnAC    363  

SM00180: domain 2 of 3, from 372 to 425: score 32.2, E = 7.2e-05
                   *->CdCnlpppvG....Cdp.....tGqClnCkpnttGGrrCdderCapG
                      C+C+     G++++C + +  +   C+ Ck+nt G ++C   +C+ G
    KIAA1857   372    CECY-----GhsnrCSYidflnVVTCVSCKHNTRG-QHCQ--HCRLG 410  

                   yy...........gC<-*
                   yy++++ + ++++ C   
    KIAA1857   411 YYrngsaelddenVC    425  

SM00180: domain 3 of 3, from 428 to 470: score 38.9, E = 6.8e-07
                   *->CdCnlpppvG.....CdptGqClnCkpnttGGrrCdderCapGyy..
                      C+Cn     G+ +++C+ tG C+ C+++ +G ++Cd   C+p +y +
    KIAA1857   428    CNCN---QIGsvhdrCNETGFCE-CREGAAG-PKCD--DCLPTHYwr 467  

                   .gC<-*
                   +gC   
    KIAA1857   468 qGC    470  

SM00181: domain 1 of 1, from 474 to 506: score 28.6, E = 0.00087
                   *->eCa....pCsnGgtEqnGtCi.sytC.CpgpGytg.rCe<-*
                       C++++  C+nG     GtC+   +C Cp  Gytg rCe   
    KIAA1857   474    VCDddqlLCQNG-----GTCLqNQRCaCP-RGYTGvRCE    506  

//