hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14422907/chunk_1/iprscan-20080502-14422907.nocrc
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Query sequence: KIAA1855
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                  22.2    6.1e-11   1
SM00219                                                -124.7      0.002   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00220    1/1       1   257 [.     1   231 []    22.2  6.1e-11
SM00219    1/1       3   242 ..     1   280 []  -124.7    0.002

Alignments of top-scoring domains:
SM00220: domain 1 of 1, from 1 to 257: score 22.2, E = 6.1e-11
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.....erilrEiki
                                         d  t + vA+Kv + +++++ ++ E+++
    KIAA1855     1    ------------------MDLLTRENVALKVESaqqpkQVLKMEVAV 29   

                   Lkk..dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrglr
                   Lkk ++ +++++++++ +++++ y+Vm + +    +L dl ++++r+   
    KIAA1855    30 LKKlqGKDHVCRFIGCGRNeKFNYVVMQLQGR---NLADLRRSQPRGT-- 74   

                   kvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds......hvK
                     ++ +++ ++ +Qil+ +e +Hs g++HRD+KP+N  + + +++ +   
    KIAA1855    75 --FTLsTTLRLGKQILESIEAIHSVGFLHRDIKPSNFAMGRlpstyrKCY 122  

                   laDFGlArql.............ttfvGTpeYmAPEvl...gYgkpavDi
                     DFGlArq+++++++ +++++   f GT  Y +    +++  g+   D 
    KIAA1855   123 MLDFGLARQYtnttgdvrpprnvAGFRGTVRYASVNAHknrEMGR-HDDL 171  

                   WSlGcilyElltGkpPFp......qldlifkkig................
                   WSl  +l E+++G+ P+++ ++++q+ +i +k  ++   ++ +++ +   
    KIAA1855   172 WSLFYMLVEFAVGQLPWRkikdkeQVGMIKEKYEhrmllkhmpsefhlfl 221  

                   .........SpeakdLikklLvkdPekRltaeaLedeldikaHPff<-*
                   ++  + ++ +++  +Li+  ++   ++R    + e        + f   
    KIAA1855   222 dhiasldyfTKPDYQLIMSVFENSMKER---GIAE-------NEAF    257  

SM00219: domain 1 of 1, from 3 to 242: score -124.7, E = 0.002
                   *->ltlgkkLGeGaFGeVykGtlk.ieVAVKtLkeda.keeFlrEakiMk
                                         l++++VA K+  +  +k+ +  E  ++k
    KIAA1855     3    ------------------LLTrENVALKVESAQQpKQVLKMEVAVLK 31   

                   klGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLrknrp
                   kl    +++ +++G+ + e       +  ++vm +  g +L d  r+  +
    KIAA1855    32 KL-QGKDHVCRFIGCGRNE-------KFNYVVMQL-QGRNLADLRRSQPR 72   

                   k.lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk....vvK
                    +++ls+ l    QI +  e ++s +f HRD+   N   g+  ++ + + 
    KIAA1855    73 GtFTLSTTLRLGKQILESIEAIHSVGFLHRDIKPSNFAMGRLPstyrKCY 122  

                   IsDFGLsRdlyddDkkG.eskdyYrkkggkggktllPirWmAPEslkdgk
                     DFGL+R  ++   +G+++    ++    g +    +r  +  + k ++
    KIAA1855   123 MLDFGLARQYTNT--TGdVRPPRNVA----GFR--GTVRYASVNAHKNRE 164  

                   FtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlpk
                        D WS   +L E f  G+ P+       ++++e +  +k+ y  + 
    KIAA1855   165 MGRHDDLWSLFYMLVE-FAVGQLPWRK-----IKDKEQVGMIKEKYEHRM 208  

                   PendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                             ++P+e +         d    P  + + + +   
    KIAA1855   209 LLK-------HMPSEFHLFLDHIASLDYFTKPDYQLIMSVF    242  

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