hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14422907/chunk_1/iprscan-20080502-14422907.nocrc
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Query sequence: KIAA1855
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00069.15.fs Protein kinase domain                           72.8    1.4e-20   2
PF00069.15.ls Protein kinase domain                           31.2    1.9e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00069.15.fs   1/2       1   109 [.    19   140 ..    48.6  1.1e-13
PF00069.15.ls   1/1       1   242 [.     1   287 []    31.2  1.9e-10
PF00069.15.fs   2/2     125   189 ..   156   214 ..    24.3  9.3e-07

Alignments of top-scoring domains:
PF00069.15.fs: domain 1 of 2, from 1 to 109: score 48.6, E = 1.1e-13
                   *->khkgtgkiVAvKiikkrkekskkdktarrlsEiqilkrL.sHpNIvr
                      ++  t++ VA+K+ + +  k   ++      E+++lk+L++ ++++r
    KIAA1855     1    MDLLTRENVALKVESAQQPKQVLKM------EVAVLKKLqGKDHVCR 41   

                   lidvfedkdhlylVlEycegGLrvldLfdylsetrrkgpllfsedeakki
                   +i++ ++++  y+V+ + +    ++dL     +++ +g++  +  +  + 
    KIAA1855    42 FIGCGRNEKFNYVVMQLQGRN--LADLR----RSQPRGTF--TLSTTLRL 83   

                   alQilrgleYLHsngiiHRDLKPeNI<-*
                    +Qil+ +e +Hs g++HRD+KP+N+   
    KIAA1855    84 GKQILESIEAIHSVGFLHRDIKPSNF    109  

PF00069.15.ls: domain 1 of 1, from 1 to 242: score 31.2, E = 1.9e-10
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                                        ++  t++ VA+K+ + +  k   ++    
    KIAA1855     1    ------------------MDLLTRENVALKVESAQQPKQVLKM---- 25   

                   lsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvldLfdyls
                     E+++lk+L++ ++++r+i++ ++++  y+V+ + +    ++dL     
    KIAA1855    26 --EVAVLKKLqGKDHVCRFIGCGRNEKFNYVVMQLQGRN--LADLR---- 67   

                   etrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnng
                   +++ +g++  +  +  +  +Qil+ +e +Hs g++HRD+KP+N+ + + +
    KIAA1855    68 RSQPRGTF--TLSTTLRLGKQILESIEAIHSVGFLHRDIKPSNFAMGRLP 115  

                   vvdaflKiaDFGlAkkls.....t.sss.lttfvGTpwYmAPEvllggng
                    +  +    DFGlA+++ +++++ ++ ++  +f GT +Y++   ++ +++
    KIAA1855   116 STYRKCYMLDFGLARQYTnttgdVrPPRnVAGFRGTVRYASVNAHK-NRE 164  

                   ygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefd
                    g+  D WSl  +l e++ G++P++     ++  q  +i+++ +   ++ 
    KIAA1855   165 MGRHDDLWSLFYMLVEFAVGQLPWRKI---KdKEQVGMIKEKYE---HRM 208  

                   spewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<
                     +  +             +e+  +++ +  +D    +  + i+    f 
    KIAA1855   209 LLKHMP-------------SEFHLFLDHIASLDYFTKPDYQLIMSV--F  242  

                   -*
                     
    KIAA1855     -    -    

PF00069.15.fs: domain 2 of 2, from 125 to 189: score 24.3, E = 9.3e-07
                   *->DFGlAkkls.....t.sss.lttfvGTpwYmAPEvllggngygtkvD
                      DFGlA+++ +++++ ++ ++  +f GT +Y++   ++ +++ g+  D
    KIAA1855   125    DFGLARQYTnttgdVrPPRnVAGFRGTVRYASVNAHK-NREMGRHDD 170  

                   vWSlGvilyelltGkpPFs<-*
                    WSl  +l e++ G++P++   
    KIAA1855   171 LWSLFYMLVEFAVGQLPWR    189  

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