hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14405290/chunk_1/iprscan-20080502-14405290.nocrc
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Query sequence: KIAA1854
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                 162.1    5.7e-44  10
SM00082                                                  43.5    2.9e-08   2
SM00013                                                  38.0    1.2e-06   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00013     1/2      34    70 ..     1    38 []    12.9        4
SM00369     1/10     95   114 ..     1    24 []     6.3       72
SM00369     2/10    115   138 ..     1    24 []    22.9    0.046
SM00369     3/10    139   162 ..     1    24 []    15.2      5.8
SM00369     4/10    163   186 ..     1    24 []    19.6     0.45
SM00369     5/10    187   210 ..     1    24 []     5.1       98
SM00082     1/2     222   270 ..     1    55 []    31.3  0.00013
SM00013     2/2     345   382 ..     1    38 []    25.2   0.0093
SM00369     6/10    404   427 ..     1    24 []    13.9      8.4
SM00369     7/10    428   451 ..     1    24 []    22.6    0.054
SM00369     8/10    452   475 ..     1    24 []    18.4        1
SM00369     9/10    476   499 ..     1    24 []    29.0  0.00065
SM00369    10/10    500   523 ..     1    24 []     9.1       32
SM00082     2/2     535   572 .]     1    55 []    12.2     0.92

Alignments of top-scoring domains:
SM00013: domain 1 of 2, from 34 to 70: score 12.9, E = 4
                   *->qCPapCtCsp.dfgtaVdCsgrgLttlevPldlPadttl<-*
                      +C   C C+++   + ++C ++g t  +v l  P++ +    
    KIAA1854    34    ICKIRCLCEEkENVLNINCENKGFT--TVSLLQPPQYRI    70   

SM00369: domain 1 of 10, from 95 to 114: score 6.3, E = 72
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                           +L+L+nN L+++  gaF+g   
    KIAA1854    95    ----VTLHLGNNGLQEIRTGAFSG    114  

SM00369: domain 2 of 10, from 115 to 138: score 22.9, E = 0.046
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L  L++L+L+nN+L+ L +++F g   
    KIAA1854   115    LKTLKRLHLNNNKLEILREDTFLG    138  

SM00369: domain 3 of 10, from 139 to 162: score 15.2, E = 5.8
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L+ L  ++N ++++ +gaF+    
    KIAA1854   139    LESLEYLQADYNYISAIEAGAFSK    162  

SM00369: domain 4 of 10, from 163 to 186: score 19.6, E = 0.45
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L++L L++N L sLP+++F+    
    KIAA1854   163    LNKLKVLILNDNLLLSLPSNVFRF    186  

SM00369: domain 5 of 10, from 187 to 210: score 5.1, E = 98
                   *->LpnLreLdLsnNqLtsLP.pgaFqg<-*
                       + L++LdL +N+L+  P +g++++   
    KIAA1854   187    -VLLTHLDLRGNRLKVMPfAGVLEH    210  

SM00082: domain 1 of 2, from 222 to 270: score 31.3, E = 0.00013
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                      NP+nC+C+L++L+ wl+    +++ +   +++C++P +l+G+ +  l
    KIAA1854   222    NPWNCTCDLLPLKAWLDT--ITVFVG---EIVCETPFRLHGKDVTQL 263  

                   lpsefsCp<-*
                   ++  + Cp   
    KIAA1854   264 TR-QDLCP    270  

SM00013: domain 2 of 2, from 345 to 382: score 25.2, E = 0.0093
                   *->qCPapCtCsp...dfgtaVdCsgrgLttlevPldlPadttl<-*
                       CP +C+C+ +++d g+ V+C++r+ t   +   l+++ t    
    KIAA1854   345    TCPSSCVCTSqssDNGLNVNCQERKFT--NISD-LQPKPTS    382  

SM00369: domain 6 of 10, from 404 to 427: score 13.9, E = 8.4
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                       ++L  L+L+nN++  + +gaF +   
    KIAA1854   404    YSSLDLLHLGNNRIAVIQEGAFTN    427  

SM00369: domain 7 of 10, from 428 to 451: score 22.6, E = 0.054
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++Lr+L+L++N L+ L p +F+g   
    KIAA1854   428    LTSLRRLYLNGNYLEVLYPSMFDG    451  

SM00369: domain 8 of 10, from 452 to 475: score 18.4, E = 1
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L+ L+L++N ++++ p +F+    
    KIAA1854   452    LQSLQYLYLEYNVIKEIKPLTFDA    475  

SM00369: domain 9 of 10, from 476 to 499: score 29.0, E = 0.00065
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L nL+ L L+nN L+sLP+++F+g   
    KIAA1854   476    LINLQLLFLNNNLLRSLPDNIFGG    499  

SM00369: domain 10 of 10, from 500 to 523: score 9.1, E = 32
                   *->LpnLreLdLsnNqLtsLP.pgaFqg<-*
                       ++L++L+L nN++++LP  g+++    
    KIAA1854   500    -TALTRLNLRNNHFSHLPvKGVLDQ    523  

SM00082: domain 2 of 2, from 535 to 572: score 12.2, E = 0.92
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                      NP++C+C+++ L++w e +n+ ++     +++C+sP +++G      
    KIAA1854   535    NPWDCTCDIMGLKDWTEHANSPVIIN---EVTCESPAKHAG------ 572  

                   lpsefsCp<-*
                              
    KIAA1854     - --------    -    

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