hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14405290/chunk_1/iprscan-20080502-14405290.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1854 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00560.23.ls Leucine Rich Repeat 120.0 6.4e-33 12 PF00560.23.fs Leucine Rich Repeat 97.6 3.5e-26 12 PF01462.9.fs Leucine rich repeat N-terminal domain 32.6 5.3e-09 2 PF01462.9.ls Leucine rich repeat N-terminal domain 36.5 8.4e-08 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.ls 2/12 93 115 .. 1 24 [] 10.8 2.5 PF00560.23.ls 3/12 117 139 .. 1 24 [] 12.3 1.3 PF00560.23.ls 4/12 141 163 .. 1 24 [] 12.2 1.4 PF00560.23.ls 5/12 165 187 .. 1 24 [] 9.3 4.8 PF00560.23.ls 6/12 188 208 .. 1 24 [] 8.7 6.2 PF01462.9.ls 2/2 345 378 .. 1 34 [] 27.2 5.3e-05 PF01462.9.fs 2/2 345 378 .. 1 34 [] 25.3 8.8e-07 PF00560.23.ls 8/12 406 428 .. 1 24 [] 12.7 1.1 PF00560.23.ls 9/12 430 452 .. 1 24 [] 13.5 0.72 PF00560.23.fs 9/12 430 452 .. 1 24 [] 11.6 0.04 PF00560.23.ls 10/12 454 476 .. 1 24 [] 12.7 1.1 PF00560.23.ls 11/12 478 500 .. 1 24 [] 11.8 1.7 PF00560.23.ls 12/12 501 523 .. 1 24 [] 9.5 4.3 Alignments of top-scoring domains: PF00560.23.ls: domain 2 of 12, from 93 to 115: score 10.8, E = 2.5 *->nLeeLdLsgCNpsltgslpss.l.nl<-* n +L+L++ N +l+ ++ +++++l KIAA1854 93 NAVTLHLGN-N-GLQ-EIRTGaFsGL 115 PF00560.23.ls: domain 3 of 12, from 117 to 139: score 12.3, E = 1.3 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L+ L+L++ N +l+ l ++++ +l KIAA1854 117 TLKRLHLNN-N-KLE-ILREDtFlGL 139 PF00560.23.ls: domain 4 of 12, from 141 to 163: score 12.2, E = 1.4 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +Le+L ++ N ++ ++++++++l KIAA1854 141 SLEYLQADY-N-YIS-AIEAGaFsKL 163 PF00560.23.ls: domain 5 of 12, from 165 to 187: score 9.3, E = 4.8 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L L++ N l slps+ ++ KIAA1854 165 KLKVLILND-N-LLL-SLPSNvFrFV 187 PF00560.23.ls: domain 6 of 12, from 188 to 208: score 8.7, E = 6.2 *->nLeeLdLsgCNpsltgslpssl.nl<-* L++LdL+g N +l + +p ++l KIAA1854 188 LLTHLDLRG-N-RL-KVMPF-AgVL 208 PF01462.9.ls: domain 2 of 2, from 345 to 378: score 27.2, E = 5.3e-05 *->aCpapCtCser.ytdglvVdCsgrgLtvavPrdlP<-* Cp +C+C++++ + gl+V+C++r+ t + + P KIAA1854 345 TCPSSCVCTSQsSDNGLNVNCQERKFT-NISDLQP 378 PF01462.9.fs: domain 2 of 2, from 345 to 378: score 25.3, E = 8.8e-07 *->aCpapCtCser.ytdglvVdCsgrgLtvavPrdlP<-* Cp +C+C++++ + gl+V+C++r+ t + + P KIAA1854 345 TCPSSCVCTSQsSDNGLNVNCQERKFT-NISDLQP 378 PF00560.23.ls: domain 8 of 12, from 406 to 428: score 12.7, E = 1.1 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L L+L++ N ++ +++++++nl KIAA1854 406 SLDLLHLGN-N-RIA-VIQEGaFtNL 428 PF00560.23.ls: domain 9 of 12, from 430 to 452: score 13.5, E = 0.72 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L+ L+L+g N l+ l +s +++l KIAA1854 430 SLRRLYLNG-N-YLE-VLYPSmFdGL 452 PF00560.23.fs: domain 9 of 12, from 430 to 452: score 11.6, E = 0.04 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L+ L+L+g N l+ l +s +++l KIAA1854 430 SLRRLYLNG-N-YLE-VLYPSmFdGL 452 PF00560.23.ls: domain 10 of 12, from 454 to 476: score 12.7, E = 1.1 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L+L++ N + +++ + +++ l KIAA1854 454 SLQYLYLEY-N-VI-KEIKPLtFdAL 476 PF00560.23.ls: domain 11 of 12, from 478 to 500: score 11.8, E = 1.7 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL+ L L++ N l +slp++ +++ KIAA1854 478 NLQLLFLNN-N-LL-RSLPDNiFgGT 500 PF00560.23.ls: domain 12 of 12, from 501 to 523: score 9.5, E = 4.3 *->nLeeLdLsgCNpsltgslpss.l.nl<-* L+ L+L++ N +++ +lp+ ++ + KIAA1854 501 ALTRLNLRN-N-HFS-HLPVKgVlDQ 523 //