hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14373150/chunk_1/iprscan-20080502-14373150.nocrc
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Query sequence: KIAA1852
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 395.1   4.1e-114  15
SM00349                                                 148.6    6.5e-40   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00349      1/1     218   278 ..     1    62 []   148.6  6.5e-40
SM00355      1/15    473   495 ..     1    23 []    10.2       22
SM00355      2/15    556   578 ..     1    23 []    14.8      6.7
SM00355      3/15    584   606 ..     1    23 []    33.6  2.7e-05
SM00355      4/15    612   634 ..     1    23 []    28.5  0.00095
SM00355      5/15    640   662 ..     1    23 []    29.5  0.00047
SM00355      6/15    668   690 ..     1    23 []    32.3  6.6e-05
SM00355      7/15    696   718 ..     1    23 []    28.7  0.00079
SM00355      8/15    724   746 ..     1    23 []    31.6  0.00011
SM00355      9/15    752   774 ..     1    23 []    27.2   0.0022
SM00355     10/15    780   802 ..     1    23 []    27.6   0.0017
SM00355     11/15    808   830 ..     1    23 []    26.4   0.0039
SM00355     12/15    836   858 ..     1    23 []    22.8    0.049
SM00355     13/15    864   886 ..     1    23 []    29.2  0.00058
SM00355     14/15    892   914 ..     1    23 []    24.1    0.019
SM00355     15/15    920   942 ..     1    23 []    28.6  0.00088

Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 218 to 278: score 148.6, E = 6.5e-40
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      VtF+DVAVdF+qEEW+qLD  Qr+LYRdVMlE+Y++L S+G  q++k
    KIAA1852   218    VTFKDVAVDFTQEEWGQLDLVQRTLYRDVMLETYGHLLSVG-NQIAK 263  

                   pdliskLEqgeEpwi<-*
                   p++is+LEqgeEpw+   
    KIAA1852   264 PEVISLLEQGEEPWS    278  

SM00355: domain 1 of 15, from 473 to 495: score 10.2, E = 22
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+ ++ C++ f++ +++++H r H   
    KIAA1852   473    YEYKE-CHQIFNQSpSFNEHPRLH    495  

SM00355: domain 2 of 15, from 556 to 578: score 14.8, E = 6.7
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y  ++ Cg sf + + L++H ++H   
    KIAA1852   556    YDYNE-CGTSFIWSsYLIQHKKTH    578  

SM00355: domain 3 of 15, from 584 to 606: score 33.6, E = 2.7e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+f++++aL++H r+H   
    KIAA1852   584    YECDK-CGKVFRNRsALTKHERTH    606  

SM00355: domain 4 of 15, from 612 to 634: score 28.5, E = 0.00095
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs+ ++L+ H r+H   
    KIAA1852   612    YECNK-CGKAFSWNsHLIVHKRIH    634  

SM00355: domain 5 of 15, from 640 to 662: score 29.5, E = 0.00047
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgksf++ ++L+ H+r+H   
    KIAA1852   640    YVCNE-CGKSFNWNsHLIGHQRTH    662  

SM00355: domain 6 of 15, from 668 to 690: score 32.3, E = 6.6e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgksfs+ ++L+ Hmr+H   
    KIAA1852   668    FECTE-CGKSFSWSsHLIAHMRMH    690  

SM00355: domain 7 of 15, from 696 to 718: score 28.7, E = 0.00079
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C k f++++aL +H r+H   
    KIAA1852   696    FKCDE-CEKAFRDYsALSKHERTH    718  

SM00355: domain 8 of 15, from 724 to 746: score 31.6, E = 0.00011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgksfs+ ++L+ H+r+H   
    KIAA1852   724    YKCTE-CGKSFSWSsHLIAHQRTH    746  

SM00355: domain 9 of 15, from 752 to 774: score 27.2, E = 0.0022
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk f+ ++aL++H  +H   
    KIAA1852   752    YNCQE-CGKAFRERsALTKHEIIH    774  

SM00355: domain 10 of 15, from 780 to 802: score 27.6, E = 0.0017
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgks+s+  +L+rH+r+H   
    KIAA1852   780    YECNK-CGKSCSQMaHLVRHQRTH    802  

SM00355: domain 11 of 15, from 808 to 830: score 26.4, E = 0.0039
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgksfs+  +L+ H r+H   
    KIAA1852   808    YECNK-CGKSFSQScHLVAHRRIH    830  

SM00355: domain 12 of 15, from 836 to 858: score 22.8, E = 0.049
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C +sf+  ++L+ H r+H   
    KIAA1852   836    YKCNQ-CERSFNCSsHLIAHRRTH    858  

SM00355: domain 13 of 15, from 864 to 886: score 29.2, E = 0.00058
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  ++L+ H+r H   
    KIAA1852   864    YRCNE-CGKAFNESsSLIVHLRNH    886  

SM00355: domain 14 of 15, from 892 to 914: score 24.1, E = 0.019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C k f+  ++L+ H+r+H   
    KIAA1852   892    YKCNH-CEKAFCKNsSLIIHQRMH    914  

SM00355: domain 15 of 15, from 920 to 942: score 28.6, E = 0.00088
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgk fs ++aL +H+r H   
    KIAA1852   920    FICSE-CGKAFSGHsALLQHQRNH    942  

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