hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14373150/chunk_1/iprscan-20080502-14373150.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1852 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 450.1 2.7e-132 15 PF00096.16.fs Zinc finger, C2H2 type 430.9 1.7e-126 15 PF01352.17.fs KRAB box 99.1 1.5e-27 1 PF01352.17.ls KRAB box 101.1 3.1e-27 1 PF01096.9.fs Transcription factor S-II (TFIIS) 56.8 7e-17 11 PF01286.9.fs XPA protein N-terminal 43.1 1.6e-11 11 PF07754.2.fs Domain of unknown function (DUF1610) 29.9 5.3e-07 10 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 19.9 8.6e-06 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 218 258 .. 1 41 [] 99.1 1.5e-27 PF01352.17.ls 1/1 218 258 .. 1 41 [] 101.1 3.1e-27 PF00096.16.ls 3/15 584 606 .. 1 24 [] 38.6 2e-08 PF00096.16.fs 3/15 584 606 .. 1 24 [] 36.6 7.2e-08 PF00096.16.ls 4/15 612 634 .. 1 24 [] 35.1 2.2e-07 PF00096.16.fs 4/15 612 634 .. 1 24 [] 33.1 5.2e-07 PF00096.16.ls 5/15 640 662 .. 1 24 [] 36.1 1.1e-07 PF00096.16.fs 5/15 640 662 .. 1 24 [] 34.2 2.9e-07 PF00096.16.ls 6/15 668 690 .. 1 24 [] 38.3 2.5e-08 PF00096.16.fs 6/15 668 690 .. 1 24 [] 36.3 8.5e-08 PF00096.16.ls 7/15 696 718 .. 1 24 [] 32.3 1.6e-06 PF00096.16.fs 7/15 696 718 .. 1 24 [] 30.3 2.6e-06 PF00096.16.ls 8/15 724 746 .. 1 24 [] 39.1 1.4e-08 PF00096.16.fs 8/15 724 746 .. 1 24 [] 37.1 5.4e-08 PF00096.16.ls 9/15 752 774 .. 1 24 [] 31.4 2.9e-06 PF00096.16.fs 9/15 752 774 .. 1 24 [] 29.5 4.3e-06 PF00096.16.ls 10/15 780 802 .. 1 24 [] 33.6 6.2e-07 PF00096.16.fs 10/15 780 802 .. 1 24 [] 31.7 1.2e-06 PF00096.16.ls 11/15 808 830 .. 1 24 [] 32.0 1.9e-06 PF00096.16.fs 11/15 808 830 .. 1 24 [] 30.1 3e-06 PF00096.16.ls 12/15 836 858 .. 1 24 [] 23.4 0.00075 PF00096.16.ls 13/15 864 886 .. 1 24 [] 33.9 5.1e-07 PF00096.16.fs 13/15 864 886 .. 1 24 [] 32.0 1e-06 PF00096.16.fs 14/15 892 914 .. 1 24 [] 27.8 1.1e-05 PF00096.16.ls 14/15 892 914 .. 1 24 [] 29.8 9.1e-06 PF00096.16.ls 15/15 920 942 .. 1 24 [] 32.2 1.7e-06 PF00096.16.fs 15/15 920 942 .. 1 24 [] 30.2 2.8e-06 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 218 to 258: score 99.1, E = 1.5e-27 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF+DVaVdFtqEEW++Ld Qr+LYrdVMlE+y++L+S+g KIAA1852 218 VTFKDVAVDFTQEEWGQLDLVQRTLYRDVMLETYGHLLSVG 258 PF01352.17.ls: domain 1 of 1, from 218 to 258: score 101.1, E = 3.1e-27 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF+DVaVdFtqEEW++Ld Qr+LYrdVMlE+y++L+S+g KIAA1852 218 VTFKDVAVDFTQEEWGQLDLVQRTLYRDVMLETYGHLLSVG 258 PF00096.16.ls: domain 3 of 15, from 584 to 606: score 38.6, E = 2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s L++H rtH KIAA1852 584 YECD-KCGKVFRNRSALTKHERTH 606 PF00096.16.fs: domain 3 of 15, from 584 to 606: score 36.6, E = 7.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s L++H rtH KIAA1852 584 YECD-KCGKVFRNRSALTKHERTH 606 PF00096.16.ls: domain 4 of 15, from 612 to 634: score 35.1, E = 2.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs +s+L H+r+H KIAA1852 612 YECN-KCGKAFSWNSHLIVHKRIH 634 PF00096.16.fs: domain 4 of 15, from 612 to 634: score 33.1, E = 5.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs +s+L H+r+H KIAA1852 612 YECN-KCGKAFSWNSHLIVHKRIH 634 PF00096.16.ls: domain 5 of 15, from 640 to 662: score 36.1, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF+ +s+L H+rtH KIAA1852 640 YVCN-ECGKSFNWNSHLIGHQRTH 662 PF00096.16.fs: domain 5 of 15, from 640 to 662: score 34.2, E = 2.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF+ +s+L H+rtH KIAA1852 640 YVCN-ECGKSFNWNSHLIGHQRTH 662 PF00096.16.ls: domain 6 of 15, from 668 to 690: score 38.3, E = 2.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksFs +s+L +H+r+H KIAA1852 668 FECT-ECGKSFSWSSHLIAHMRMH 690 PF00096.16.fs: domain 6 of 15, from 668 to 690: score 36.3, E = 8.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksFs +s+L +H+r+H KIAA1852 668 FECT-ECGKSFSWSSHLIAHMRMH 690 PF00096.16.ls: domain 7 of 15, from 696 to 718: score 32.3, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C k+F++ s L +H rtH KIAA1852 696 FKCD-ECEKAFRDYSALSKHERTH 718 PF00096.16.fs: domain 7 of 15, from 696 to 718: score 30.3, E = 2.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C k+F++ s L +H rtH KIAA1852 696 FKCD-ECEKAFRDYSALSKHERTH 718 PF00096.16.ls: domain 8 of 15, from 724 to 746: score 39.1, E = 1.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksFs +s+L +H+rtH KIAA1852 724 YKCT-ECGKSFSWSSHLIAHQRTH 746 PF00096.16.fs: domain 8 of 15, from 724 to 746: score 37.1, E = 5.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksFs +s+L +H+rtH KIAA1852 724 YKCT-ECGKSFSWSSHLIAHQRTH 746 PF00096.16.ls: domain 9 of 15, from 752 to 774: score 31.4, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+ +s L++H +H KIAA1852 752 YNCQ-ECGKAFRERSALTKHEIIH 774 PF00096.16.fs: domain 9 of 15, from 752 to 774: score 29.5, E = 4.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+ +s L++H +H KIAA1852 752 YNCQ-ECGKAFRERSALTKHEIIH 774 PF00096.16.ls: domain 10 of 15, from 780 to 802: score 33.6, E = 6.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgks+s+ ++L rH+rtH KIAA1852 780 YECN-KCGKSCSQMAHLVRHQRTH 802 PF00096.16.fs: domain 10 of 15, from 780 to 802: score 31.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgks+s+ ++L rH+rtH KIAA1852 780 YECN-KCGKSCSQMAHLVRHQRTH 802 PF00096.16.ls: domain 11 of 15, from 808 to 830: score 32.0, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++ +L +H+r+H KIAA1852 808 YECN-KCGKSFSQSCHLVAHRRIH 830 PF00096.16.fs: domain 11 of 15, from 808 to 830: score 30.1, E = 3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++ +L +H+r+H KIAA1852 808 YECN-KCGKSFSQSCHLVAHRRIH 830 PF00096.16.ls: domain 12 of 15, from 836 to 858: score 23.4, E = 0.00075 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C +sF+ +s+L +H+rtH KIAA1852 836 YKCN-QCERSFNCSSHLIAHRRTH 858 PF00096.16.ls: domain 13 of 15, from 864 to 886: score 33.9, E = 5.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +s+L Hlr H KIAA1852 864 YRCN-ECGKAFNESSSLIVHLRNH 886 PF00096.16.fs: domain 13 of 15, from 864 to 886: score 32.0, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +s+L Hlr H KIAA1852 864 YRCN-ECGKAFNESSSLIVHLRNH 886 PF00096.16.fs: domain 14 of 15, from 892 to 914: score 27.8, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F+ +s+L H+r+H KIAA1852 892 YKCN-HCEKAFCKNSSLIIHQRMH 914 PF00096.16.ls: domain 14 of 15, from 892 to 914: score 29.8, E = 9.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F+ +s+L H+r+H KIAA1852 892 YKCN-HCEKAFCKNSSLIIHQRMH 914 PF00096.16.ls: domain 15 of 15, from 920 to 942: score 32.2, E = 1.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+Fs +s L +H+r H KIAA1852 920 FICS-ECGKAFSGHSALLQHQRNH 942 PF00096.16.fs: domain 15 of 15, from 920 to 942: score 30.2, E = 2.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+Fs +s L +H+r H KIAA1852 920 FICS-ECGKAFSGHSALLQHQRNH 942 //