hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14355568/chunk_1/iprscan-20080502-14355568.nocrc
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Query sequence: KIAA1851
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                  56.8    2.9e-12   6
SM00409                                                  40.5    2.3e-07   1
SM00408                                                  25.5     0.0073   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00369     1/6      78   102 ..     1    24 []     3.8  1.4e+02
SM00369     2/6     103   126 ..     1    24 []    19.8     0.39
SM00369     3/6     128   150 ..     1    24 []     4.5  1.2e+02
SM00369     4/6     151   174 ..     1    24 []    21.4     0.12
SM00369     5/6     175   195 ..     1    24 []     6.5       68
SM00369     6/6     202   225 ..     1    24 []     0.8  3.3e+02
SM00409     1/1     304   391 ..     1    58 []    40.5  2.3e-07
SM00408     1/1     310   378 ..     1    56 []    25.5   0.0073

Alignments of top-scoring domains:
SM00369: domain 1 of 6, from 78 to 102: score 3.8, E = 1.4e+02
                   *->LpnL.reLdLsnNqLtsLPpgaFqg<-*
                      Lp+ +  LdLs+N+L++L pg +++   
    KIAA1851    78    LPAAtADLDLSHNALQRLRPGWLAP    102  

SM00369: domain 2 of 6, from 103 to 126: score 19.8, E = 0.39
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +Lr L+L++N L +L +g+F +   
    KIAA1851   103    LFQLRALHLDHNELDALGRGVFVN    126  

SM00369: domain 3 of 6, from 128 to 150: score 4.5, E = 1.2e+02
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                       + Lr LdLs+N L++L +  ++g   
    KIAA1851   128    -SGLRLLDLSSNTLRALGRHDLDG    150  

SM00369: domain 4 of 6, from 151 to 174: score 21.4, E = 0.12
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L++L L nN+L +L + aF+g   
    KIAA1851   151    LGALEKLLLFNNRLVHLDEHAFHG    174  

SM00369: domain 5 of 6, from 175 to 195: score 6.5, E = 68
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L +L+L+ N L s     F++   
    KIAA1851   175    LRALSHLYLGCNELASFS---FDH    195  

SM00369: domain 6 of 6, from 202 to 225: score 0.8, E = 3.3e+02
                   *->LpnLreLdLsnNqLtsLP.pgaFqg<-*
                       ++L +LdLs+N+L ++  p++ +    
    KIAA1851   202    -THLLTLDLSSNRLGHISvPELAAL    225  

SM00409: domain 1 of 1, from 304 to 391: score 40.5, E = 2.3e-07
                   *->pp.vtvkeGesvtLtC.as....titWy...................
                       +++++ +G s++L C+ s +  +i W ++++   + +++++++   
    KIAA1851   304    EEhLYALVGRSLRLYCnTSvpamRIAWVspqqellrapgsrdgsiav 350  

                   .....LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-*
                     +++L I+nv+++++   G ++C at+++ +++++   + +++V+   
    KIAA1851   351 ladgsLAIgNVQEQHA---GLFVCLATgprlHHNQTH--EYNVSVH    391  

SM00408: domain 1 of 1, from 310 to 378: score 25.5, E = 0.0073
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.............sgst
                      l G+s++L C  +  p+  I W+ + ++l + +++++++     +++
    KIAA1851   310    LVGRSLRLYCN-TSVPAMRIAWVSpQQELLrapgsrdgsiavlADGS 355  

                   LtiknvsleDsGlYtCvArNsvg<-*
                   L i nv++ ++Gl +C+A+++     
    KIAA1851   356 LAIGNVQEQHAGLFVCLATGPRL    378  

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