hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14322974/chunk_1/iprscan-20080502-14322974.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1849 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00314 64.5 1.3e-14 1 SM00228 64.5 1.4e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00314 1/1 102 205 .. 1 102 [] 64.5 1.3e-14 SM00228 1/1 1023 1100 .. 1 80 [] 64.5 1.4e-14 Alignments of top-scoring domains: SM00314: domain 1 of 1, from 102 to 205: score 64.5, E = 1.3e-14 *->dtyvlrVyvddlsavdpgqtyktlrvskrtTardViqqllekfhltd + +vl+V++d+++ g yk+++++ +++ar++++++le++ l++ KIAA1849 102 APGVLKVFGDSVC---TGTHYKSVLATGTSSARELVKEALERYALDP 145 edpeeYvLvevlp.........sggkErvLlddenPlqlqklwprdaksp +++ +YvL+ v+ + ++ +++ + +rv d e+Pl +q+lw ++ KIAA1849 146 RQAGQYVLCDVVGqagdagqrwQARCFRVFGDSEKPLLIQELWKPR---- 191 rqsslrFvLrkrdd<-* ++ s+rF Lrkr+d KIAA1849 192 EGLSRRFELRKRSD 205 SM00228: domain 1 of 1, from 1023 to 1100: score 64.5, E = 1.4e-14 *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv glG + ++ +++ + +g+++ ++pGspAa +Gr L GD+ KIAA1849 1023 SGLGMGLIDgmhthlgapGLYIQTLLPGSPAAADGR-----LSLGDR 1064 IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* IleVNG s+ gl +++avdl++ g+ k +++v + + KIAA1849 1065 ILEVNG-SSLLGLGYLRAVDLIRHGGK-----KMRFLVAKSD 1100 //