# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg05386mrp1.fasta.huge -Q ../query/KIAA1849.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1849, 1114 aa
 vs ./tmplib.25089 library

1986391 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 9.4162+/-0.0092; mu= -3.0082+/- 0.622
 mean_var=358.3215+/-84.133, 0's: 0 Z-trim: 5  B-trim: 0 in 0/40
 Lambda= 0.067754

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0705  ( 1483 res)   hg03359s1                  (1483)  248 39.3   0.005


>>KIAA0705  ( 1483 res)   hg03359s1                       (1483 aa)
 initn: 396 init1: 165 opt: 248  Z-score: 146.3  bits: 39.3 E(): 0.005
Smith-Waterman score: 261;  28.745% identity (51.822% similar) in 247 aa overlap (854-1098:1042-1255)

           830       840       850       860       870       880   
KIAA18 VDLEANCLDDSIYQHLLYVRHFLWGLRSRASPGSPGRPGSGASQPVCPEGMHHVVLDGHL
                                     :: :   :.:  ..:.  ..   .. .. :
KIAA07 INMPHADIVKLIKDAGLSVTLRIIPQEELNSPTSA--PSSEKQSPMAQQS--PLAQQSPL
            1020      1030      1040        1050        1060       

           890       900       910         920       930       940 
KIAA18 EAPSCPLAPRDPGPAAREVAPERTLPLRG--APWAQAPPGRQPGRGGSQAGPPHTDSSCL
         :: : .: .:     . :: . : :.:    . .   .::  .   .  :: ::    
KIAA07 AQPS-PATPNSP---IAQPAPPQPLQLQGHENSYRSEVKARQDVKPDIRQ-PPFTDYR--
      1070          1080      1090      1100      1110       1120  

             950       960       970       980       990      1000 
KIAA18 LTPPSTPLGPEPGDPDWPESGGPCGKALPERQRNGLSGLRGAAPEGDSAALAEESPPAPS
         ::     :  :: . :    :    :  ::   :   :  .:.  .  :..   :   
KIAA07 -QPPLDYRQPPGGDYQQP----P---PLDYRQ-PPLLDYRQHSPDTRQYPLSDYRQP---
              1130             1140       1150      1160           

            1010      1020      1030      1040      1050      1060 
KIAA18 SRSSSTEDFCYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSL
             .:: : :::..:.: .:.:...  : . ..    ::.  :   .::  .::. .
KIAA07 ------QDFDY-FTVDMEKGAKGFGFSIRGGREYKMD---LYVLRLAEDGPAIRNGRMRV
           1170       1180      1190         1200      1210        

            1070      1080      1090      1100      1110           
KIAA18 GDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHFRTPPL       
       ::.:.:.:: :   . . ::..::. ::...:.:. .                       
KIAA07 GDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGQVPEYDEPAPWSSPAAAAPG
     1220      1230      1240      1250      1260      1270        

KIAA07 LPEVGVSLDDGLAPFSPSHPAPPSDPSHQISPGPTWDIKREHDVRKPKELSACGQKKQRL
     1280      1290      1300      1310      1320      1330        




1114 residues in 1 query   sequences
1986391 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:19:22 2008 done: Thu Dec 18 15:19:23 2008
 Total Scan time:  0.730 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]