# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/bm03548.fasta.huge -Q ../query/KIAA1848.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1848, 445 aa
 vs ./tmplib.25089 library

1987060 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.9968+/-0.00628; mu= 11.0708+/- 0.428
 mean_var=148.2476+/-34.634, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.105337

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0491  ( 391 res)   ha02617                     ( 391)  905 148.7 6.3e-37


>>KIAA0491  ( 391 res)   ha02617                          (391 aa)
 initn: 1206 init1: 897 opt: 905  Z-score: 754.8  bits: 148.7 E(): 6.3e-37
Smith-Waterman score: 1499;  58.273% identity (81.295% similar) in 417 aa overlap (31-445:18-391)

               10        20        30         40        50         
KIAA18 AGGCAEGWCPAAGGRGAVGGGGWAGGCRLRSGRARRPCG-HAMDFNMKKLASDAGIFFTR
                                     .: :: :   . ::::.::::.::: :..:
KIAA04              PCAPARPRHLRLAAARSAGSARLPPRMNIMDFNVKKLAADAGTFLSR
                            10        20        30        40       

      60        70        80        90       100       110         
KIAA18 AVQFTEEKFGQAEKTELDAHFENLLARADSTKNWTEKILRQTEVLLQPNPSARVEEFLYE
       ::::::::.:::::::::::.::::..:. :: :::::..::::::::::.::.:::.::
KIAA04 AVQFTEEKLGQAEKTELDAHLENLLSKAECTKIWTEKIMKQTEVLLQPNPNARIEEFVYE
        50        60        70        80        90       100       

     120       130       140       150       160       170         
KIAA18 KLDRKVPSRVTNGELLAQYMADAASELGPTTPYGKTLIKVAEAEKQLGAAERDFIHTASI
       :::::.:::..: :::.::: ::..:.:: : ::..::: .:..:..:.:.:..:.:...
KIAA04 KLDRKAPSRINNPELLGQYMIDAGTEFGPGTAYGNALIKCGETQKRIGTADRELIQTSAL
       110       120       130       140       150       160       

     180       190       200       210       220       230         
KIAA18 SFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKAKAAEAKATCEGDTVPDFQE
       .::::::::.:::.:::.:::.::::.:::::: :.:::::::::..             
KIAA04 NFLTPLRNFIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETR-------------
       170       180       190       200       210                 

     240       250       260       270       280       290         
KIAA18 TRPRNYILSASASALWNDEVDKAEQELRVAQTEFDRQAEVTRLLLEGISSTHVNHLRCLH
                           ...:::::..:.:::::::.::::::::::::..:::::.
KIAA04 --------------------NSSEQELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLN
                              220       230       240       250    

     300       310       320       330       340        350        
KIAA18 EFVKSQTTYYAQCYRHMLDLQKQLGSSQGAIFPGTFVGTTEPAS-PPLSSTSPTTAAATM
       .::..: :::::::..::::::::::     ::........ .:  :. :. :.. ... 
KIAA04 DFVEAQMTYYAQCYQYMLDLQKQLGS-----FPSNYLSNNNQTSVTPVPSVLPNAIGSSA
          260       270       280            290       300         

      360       370       380       390       400       410        
KIAA18 PVVPSVASLAPPGEASLCLEEVAPPASGTRKARVLYDYEAADSSELALLADELITVYSLP
        .  :   .. :.. :  :.:     ::.:::::::::.::.:.::.:::::.:::.:. 
KIAA04 MASTSGLVITSPSNLSD-LKEC----SGSRKARVLYDYDAANSTELSLLADEVITVFSVV
     310       320        330           340       350       360    

      420       430       440     
KIAA18 GMDPDWLIGERGNKKGKVPVTYLELLS
       ::: :::.:::::.:::::.::::::.
KIAA04 GMDSDWLMGERGNQKGKVPITYLELLN
          370       380       390 




445 residues in 1 query   sequences
1987060 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:19:20 2008 done: Thu Dec 18 15:19:20 2008
 Total Scan time:  0.430 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]