hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan_v890/data/Pfam
Sequence file:            /cdna/full/goal/bm/bm00425/w3open/interpro/cnk_1/seq.in
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Query:  bm00425  552

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
G-patch  G-patch domain                                  53.5    4.5e-12   1
zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and simil    24.2     0.0031   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-CCCH    1/1     216   241 ..     1    27 []    24.2   0.0031
G-patch    1/1     354   398 ..     1    45 []    53.5  4.5e-12

Alignments of top-scoring domains:
zf-CCCH: domain 1 of 1, from 216 to 241: score 24.2, E = 0.0031
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                      +  ++C+ff++ G C++ ++C+F+Hg+   
     bm00425   216    KSLKPCPFFLE-GKCRFKENCRFSHGQ    241  

G-patch: domain 1 of 1, from 354 to 398: score 53.5, E = 4.5e-12
                   *->tsniGfklLqKMGWkeGqGLGkneqGikePieakikpdrkGLGae<-
                      t++iG++lL KMG++ G+GLG++ +G++ePi a++ p++k+L     
     bm00425   354    TRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQC   398  

                   *
                    
     bm00425     -   -    

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