hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14255415/chunk_1/iprscan-20080502-14255415.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1845 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00720 392.4 2.6e-113 2 SM00230 181.9 6.1e-50 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00230 1/1 29 362 .. 1 384 [] 181.9 6.1e-50 SM00720 1/2 371 527 .. 1 160 [] 211.2 9.2e-59 SM00720 2/2 546 687 .. 1 160 [] 181.2 9.8e-50 Alignments of top-scoring domains: SM00230: domain 1 of 1, from 29 to 362: score 181.9, E = 6.1e-50 *->fenqkYeelrqeCkeektlFeDplFpanneissLffsqrqrkke.nd +++ + r ++lF+D Fpa++ ssLf + + KIAA1845 29 PAEPRMRAGRGA-TPARELFRDAAFPAAD--SSLFCDLSTPLAQfRE 72 fveWKRPhEifeddgamPqliVggastFtrtDicQGvLGDCWLlAAlaaL +++W+RP+Ei+ P+l+ +++ +++QG LGDCW+l A+aaL KIAA1845 73 DITWRRPQEICAT----PRLFPDDPR---EGQVKQGLLGDCWFLCACAAL 115 tlreeRfkddlLldrViPdikdq.efsprkienyaGifhFrFWrfGkWvd + Lld+ViP + q+++ + ++y G f r+W+fG Wv+ KIAA1845 116 QKSRH------LLDQVIP--PGQpSWAD---QEYRGSFTCRIWQFGRWVE 154 VvIDDrLPtyngensLlfmhsnsrNEfWsALLEKAYAKLhGcYeaLkGgs V DDrLP+ g+ L f++ + fW +LLEK YAK+hG+Ye+L g+ KIAA1845 155 VTTDDRLPCLAGR--LCFSRCQREDVFWLPLLEKVYAKVHGSYEHLWAGQ 202 ttealeDLTGgvaEsidlk.....eaelsdpeddpdeLfkdLkkaferGy ++al+DLTGg+aE+ +lk+ ++ ++ + p + ++L +++ + KIAA1845 203 VADALVDLTGGLAERWNLKgvagsGGQQDRPGRWEHRTCRQLLHLKDQC- 251 RCVdsLmgcsIgagtnqknqypmaveeEeqkanGLvkgHAYsvtDvrevd L+ c ++ + +++G + HA v D re++ KIAA1845 252 -----LISCCVLSPR------------AGARELG--EFHAFIVSDLRELQ 282 grrrllevFkskeKleLlRlRNPWGneseWnGpWSDdSpeWrnvsasekk g ++ + LlR++NPWG ++ W G W ++ ++W +v+a + KIAA1845 283 GQAGQC--------ILLLRIQNPWG-RRCWQGLWREGGEGWSQVDAAVAS 323 nLgltmdvaekdDGeFWMsfEDFlrhFtkveiCnlrpdsleyrs<-* +L + + +GeFW E Flr+F+ +++ + ++ +s KIAA1845 324 ELLSQLQ-----EGEFWVEEEEFLREFDELTVGYPVTEAGHLQS 362 SM00720: domain 1 of 2, from 371 to 527: score 211.2, E = 9.2e-59 *->kWetrslqGeWtSRgsTAGGCrNypatFwtNPQFritleepdddddd +tr+l+G+W+ +g++AGGCrN+ + F+ NP+F+++++ep++ KIAA1845 371 --HTRALPGAWV-KGQSAGGCRNN-SGFPSNPKFWLRVSEPSE---- 409 dggepppkCtVlvaLmQknRRrlrr....................skGkd V++a++Q++R ++ ++ + ++++++ ++ +++Gk+ KIAA1845 410 ----------VYIAVLQRSRLHAADwagraralvgdshtswspasIPGKH 449 fltIGfavykvpkelgqnehlsrdfflsnaprarSkdyingREVslrfrL ++++G++++kv+k+ +++++++ls++p+a++++++++REV+lr++L KIAA1845 450 YQAVGLHLWKVEKR-----RVNLPRVLSMPPVAGTACHAYDREVHLRCEL 494 PpGeYviVPSTFePneegdFlLRVFSeksiklt<-* pG+Y+ VPSTF+++ +g+FlLRVFS+++++l+ KIAA1845 495 SPGYYLAVPSTFLKDAPGEFLLRVFSTGRVSLS 527 SM00720: domain 2 of 2, from 546 to 687: score 181.2, E = 9.8e-50 *->kWetrslqGeWtSRgsTAGGCrNypatFwtNPQFritleepdddddd +W t +l+G+W+ +g+TAGG+rN+ a+++tNP+F ++++e ++ KIAA1845 546 EWGTVQLRGSWR-VGQTAGGSRNF-ASYPTNPCFPFSVPEGPGPR-- 588 dggepppkCtVlvaLmQknRRrlrrskGkdfltIGfavykvpkelgqneh +V + L+Q++R + + +f++IGf++++vp+ ++ KIAA1845 589 ---------CVRITLHQHCR-----PSDTEFHPIGFHIFQVPEG---GRS 621 lsrdfflsnaprarSkdyingREVslrfrLPpGeYviVPSTFePneegdF ++++++l + p ++ +++ +EVs+ + LP+G Y +VPST++P+ eg F KIAA1845 622 QDAPPLLLQEPLLSCVPHRYAQEVSRLCLLPAGTYKVVPSTYLPDTEGAF 671 lLRVFSek...siklt<-* ++ + + +++si+++ KIAA1845 672 TVTIATRIdrpSIHSQ 687 //