hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14255415/chunk_1/iprscan-20080502-14255415.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1845 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00648.11.fs Calpain family cysteine protease 211.2 2.2e-60 2 PF00648.11.ls Calpain family cysteine protease 182.5 9.4e-52 1 PF01067.12.fs Calpain large subunit, domain III 83.0 3.4e-25 5 PF01067.12.ls Calpain large subunit, domain III 46.3 9.8e-11 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00648.11.ls 1/1 46 349 .. 1 370 [] 182.5 9.4e-52 PF00648.11.fs 1/2 46 221 .. 1 188 [. 176.3 7.1e-50 PF00648.11.fs 2/2 271 348 .. 282 364 .. 34.9 9.4e-10 PF01067.12.ls 1/2 371 527 .. 1 164 [] 31.4 1.5e-09 PF01067.12.fs 1/5 371 407 .. 1 45 [. 16.0 9.7e-05 PF01067.12.fs 2/5 486 527 .. 123 164 .] 35.0 1.5e-10 PF01067.12.ls 2/2 546 678 .. 1 164 [] 14.8 2.9e-08 PF01067.12.fs 3/5 546 583 .. 1 44 [. 18.2 2.1e-05 Alignments of top-scoring domains: PF00648.11.ls: domain 1 of 1, from 46 to 349: score 182.5, E = 9.4e-52 *->LFeDPsFPaapkSLgykplfpassktrgieWKRPhEInenPqFivgG LF+D +FPaa++SL+ p + i W+RP EI++ P+ + + KIAA1845 46 LFRDAAFPAADSSLFCDLSTPLAQFREDITWRRPQEICATPRLFPDD 92 AsPPWAvFRTPLPsDIcQGaLGDCWLLAAiAsLTlneeLlfrVvPhdQ.s + QG LGDCW+L A A L +Ll++V+P +Q+s KIAA1845 93 PR------EG----QVKQGLLGDCWFLCACAALQKSRHLLDQVIPPGQpS 132 fqeneYAGIFhFrfWqyGeWVdVvvDDrLPtDkdGentLvFvhSaernEF +eY G F r+Wq+G WV+V DDrLP+ G+ L F++ F KIAA1845 133 WADQEYRGSFTCRIWQFGRWVEVTTDDRLPC-LAGR--LCFSRCQREDVF 179 WSALLEKAYAKlhGcYEALsGGsttEamEDfTGGvcEsyeLkqApsDmYk W +LLEK YAK+hG+YE+L G a+ D+TGG +E Lk + KIAA1845 180 WLPLLEKVYAKVHGSYEHLWAGQVADALVDLTGGLAERWNLKGVAG---- 225 imkkaieRGsLmGCsiDDGtnmtYlpsPSednLfkDLiiakalergsnsL S+ + + r + KIAA1845 226 ----------------------------SGGQQDR---PGRWEHRTC--- 241 LrDsDLDvRfLmgcSidisspvdmEaktfkGLvkgHAYSVTgvkevnyvt + L L c+ ++ + L HA V ++ e ++ KIAA1845 242 RQLLHLKDQCLISCCVLSP------RAGARELGEFHAFIVSDLRELQG-- 283 PnrGekqkLiRlRNPWGdevEWnGaWSDgSpeWreidederaeLqlkfee G+ + L+R+ NPWG W G W g W+ +d eL + KIAA1845 284 -QAGQCILLLRIQNPWG-RRCWQGLWREGGEGWSQVDAAVASELLSQLQ- 330 DGEFWMSFeDFlnhFsRlEICnLt<-* +GEFW e Fl++F+ Lt KIAA1845 331 EGEFWVEEEEFLREFD-----ELT 349 PF00648.11.fs: domain 1 of 2, from 46 to 221: score 176.3, E = 7.1e-50 *->LFeDPsFPaapkSLgykplfpassktrgieWKRPhEInenPqFivgG LF+D +FPaa++SL+ p + i W+RP EI++ P+ + + KIAA1845 46 LFRDAAFPAADSSLFCDLSTPLAQFREDITWRRPQEICATPRLFPDD 92 AsPPWAvFRTPLPsDIcQGaLGDCWLLAAiAsLTlneeLlfrVvPhdQ.s + QG LGDCW+L A A L +Ll++V+P +Q+s KIAA1845 93 PR------EG----QVKQGLLGDCWFLCACAALQKSRHLLDQVIPPGQpS 132 fqeneYAGIFhFrfWqyGeWVdVvvDDrLPtDkdGentLvFvhSaernEF +eY G F r+Wq+G WV+V DDrLP+ G+ L F++ F KIAA1845 133 WADQEYRGSFTCRIWQFGRWVEVTTDDRLPC-LAGR--LCFSRCQREDVF 179 WSALLEKAYAKlhGcYEALsGGsttEamEDfTGGvcEsyeLk<-* W +LLEK YAK+hG+YE+L G a+ D+TGG +E Lk KIAA1845 180 WLPLLEKVYAKVHGSYEHLWAGQVADALVDLTGGLAERWNLK 221 PF00648.11.fs: domain 2 of 2, from 271 to 348: score 34.9, E = 9.4e-10 *->HAYSVTgvkevnyvtPnrGekqkLiRlRNPWGdevEWnGaWSDgSpe HA V ++ e ++ G+ + L+R+ NPWG W G W g KIAA1845 271 HAFIVSDLRELQG---QAGQCILLLRIQNPWG-RRCWQGLWREGGEG 313 WreidederaeLqlkfeeDGEFWMSFeDFlnhFsRl<-* W+ +d eL + +GEFW e Fl++F+ l KIAA1845 314 WSQVDAAVASELLSQLQ-EGEFWVEEEEFLREFDEL 348 PF01067.12.ls: domain 1 of 2, from 371 to 527: score 31.4, E = 1.5e-09 *->kWelaiveGeWtRgedpsdstAGGCrNypdTFwtNPQYiitLeepDe +++ + G+W+ g + AGGCrN+ F NP + +++ ep e KIAA1845 371 --HTRALPGAWVKG-----QSAGGCRNNSG-FPSNPKFWLRVSEPSE 409 ddddedsevgCsvLvaLmQKdr.......RkeRrm..............G ++ a++Q+ r + + + R ++++++ ++ + +G KIAA1845 410 V--YI----------AVLQRSRlhaadwaGRARALvgdshtswspasipG 447 egdmltIGFavYeVpdelngqtnvhlsrdffltnqsrarSstFINlREVs + ++ G ++ +V+++ + + ++l ++a+++ + REV KIAA1845 448 K-HYQAVGLHLWKVEKRRV-------NLPRVLSMPPVAGTACHAYDREVH 489 lRfrLPpGeYvvVPSTFEPneegeFiLRVFSEkkante<-* lR +L pG Y+ VPSTF geF+LRVFS ++ ++ KIAA1845 490 LRCELSPGYYLAVPSTFLKDAPGEFLLRVFSTGRVSLS 527 PF01067.12.fs: domain 1 of 5, from 371 to 407: score 16.0, E = 9.7e-05 *->kWelaiveGeWtRgedpsdstAGGCrNypdTFwtNPQYiitLeep<- +++ + G+W+ g + AGGCrN+ F NP + +++ ep KIAA1845 371 --HTRALPGAWVKG-----QSAGGCRNNSG-FPSNPKFWLRVSEP 407 * KIAA1845 - - PF01067.12.fs: domain 2 of 5, from 486 to 527: score 35.0, E = 1.5e-10 *->REVslRfrLPpGeYvvVPSTFEPneegeFiLRVFSEkkante<-* REV lR +L pG Y+ VPSTF geF+LRVFS ++ ++ KIAA1845 486 REVHLRCELSPGYYLAVPSTFLKDAPGEFLLRVFSTGRVSLS 527 PF01067.12.ls: domain 2 of 2, from 546 to 678: score 14.8, E = 2.9e-08 *->kWelaiveGeWtRgedpsdstAGGCrNypdTFwtNPQYiitLee.pD W + + G+W++g +tAGG rN+ + + tNP + ++++e+p+ KIAA1845 546 EWGTVQLRGSWRVG-----QTAGGSRNF-ASYPTNPCFPFSVPEgPG 586 eddddedsevgCsvLvaLmQKdrRkeRrmGegdmltIGFavYeVpdelng + v + L Q r + ++++IGF++++Vp+ + KIAA1845 587 PR----------CVRITLHQHCRPS-----DTEFHPIGFHIFQVPEGGRS 621 qtnvhlsrdffltnqsrarSstFINlREVslRfrLPpGeYvvVPSTFEPn q + +l + l + r ++ EVs LP G Y vVPST+ P KIAA1845 622 QDAPPLLLQEPLLSCVPHRYAQ-----EVSRLCLLPAGTYKVVPSTYLPD 666 eegeFiLRVFSEkkante<-* eg F + + t+ KIAA1845 667 TEGAFT------VTIATR 678 PF01067.12.fs: domain 3 of 5, from 546 to 583: score 18.2, E = 2.1e-05 *->kWelaiveGeWtRgedpsdstAGGCrNypdTFwtNPQYiitLee<-* W + + G+W++g +tAGG rN+ + + tNP + ++++e KIAA1845 546 EWGTVQLRGSWRVG-----QTAGGSRNF-ASYPTNPCFPFSVPE 583 //