hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14205438/chunk_1/iprscan-20080502-14205438.nocrc
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Query sequence: KIAA1842
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00612                                                  64.6    1.2e-14   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00612      1/3     261   315 ..     1    55 []    27.1   0.0024
SM00612      2/3     316   366 ..     1    55 []    31.7   0.0001
SM00612      3/3     407   457 ..     1    55 []     5.9      4.6

Alignments of top-scoring domains:
SM00612: domain 1 of 3, from 261 to 315: score 27.1, E = 0.0024
                   *->kiYvvGGfdgttrclp.gegqrlksvEvYDpetnkWrpvpsMptpRs
                       iY++GG+ ++   + + +  + +  ++YD++tn W + ps+ ++R 
    KIAA1842   261    DIYIAGGYRPSS-SEVsIDHKAENDFWMYDHSTNRWLSKPSLLRARI 306  

                   gagvaving<-*
                   g+ ++ + g   
    KIAA1842   307 GCKLVYCCG    315  

SM00612: domain 2 of 3, from 316 to 366: score 31.7, E = 0.0001
                   *->kiYvvGGfdgttrclp.gegqrlksvEvYDpetnkWrpvpsMptpRs
                      k Y++GG+        + + ++lksvE+YD ++n W+ v  Mp++  
    KIAA1842   316    KMYAIGGRVY-----EgDGRNSLKSVECYDSRENCWTTVCAMPVAME 357  

                   gagvaving<-*
                    + ++  ++   
    KIAA1842   358 FHNAVEYKE    366  

SM00612: domain 3 of 3, from 407 to 457: score 5.9, E = 4.6
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRs.
                       iY + G  g++       qr+ +vE YD e nkW++  + p+  s 
    KIAA1842   407    SIYYIAGTCGNH-------QRMFTVEAYDIELNKWTRKKDFPCDQSi 446  

                   ..gagvaving<-*
                   +++  ++ +++   
    KIAA1842   447 npYLKLVLFQN    457  

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