# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh26155mrp1.fasta.huge -Q ../query/KIAA1838.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
KIAA1838, 917 aa
vs ./tmplib.25089 library
1986588 residues in 2037 sequences
Expectation_n fit: rho(ln(x))= 5.2075+/-0.0065; mu= 16.4878+/- 0.443
mean_var=156.4785+/-38.037, 0's: 0 Z-trim: 6 B-trim: 129 in 1/39
Lambda= 0.102529
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 39, opt: 27, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2037)
KIAA0183 ( 1111 res) ha02726 (1111) 340 63.2 1.9e-10
KIAA1802 ( 821 res) fj21631 ( 821) 167 37.4 0.0082
>>KIAA0183 ( 1111 res) ha02726 (1111 aa)
initn: 644 init1: 231 opt: 340 Z-score: 279.4 bits: 63.2 E(): 1.9e-10
Smith-Waterman score: 731; 24.471% identity (53.647% similar) in 850 aa overlap (16-826:2-809)
10 20 30 40 50
KIAA18 ILSRSSVMGVRGLQGFVGSTCPHICTVVNFKELAEHH-----RSKYPGCTPTIVVDAMCC
.. . :: . :....::. :.. : ..::: :
KIAA01 DYIEKHCPSAVVPVELQKLARGSLVGGGRQRPPQTPLRLLVDADNC
10 20 30 40
60 70 80 90 100 110
KIAA18 LRYWYTP--ESWICGGQWREYFSALRDFVKTFTAAGIKLIFFFDGMVEQDKRDEWVKRRL
:. : .:. :::: .... : ..:. ...:.:. ::.: .:. . :::::.
KIAA01 LHRLYGGFYTDWVSGGQWNHMLGYLAALAKACFGGNIELFVFFNGALEKARLHEWVKRQG
50 60 70 80 90 100
120 130 140 150 160 170
KIAA18 KNNREISRIFHYIKSHKEQPGRNMFFIPSGLAVFTRFALKTLGQETLCSLQEADYEVASY
.. . ..: ..... : . :. : .: :.:: . .. :... :: ..
KIAA01 NERQTAQQIVSHVQNKGTPPPKVWFLPPVCMAHCIRLALIRFHVKVAQSIEDHHQEVIGF
110 120 130 140 150 160
180 190 200 210 220
KIAA18 GLQHNCLGILGEDTDYLIYDTCPYFSISELCL----ESLDTVMLCREKLCESLGLCVADL
... :... :.:: . . ::: : : .:: : . ... ..: : .
KIAA01 CRENGFHGLVAYDSDYALCNIPYYFSAHALKLSRNGKSLTTSQYLMHEVAKQLDLNPNRF
170 180 190 200 210 220
230 240 250 260 270 280
KIAA18 PLLACLLGNDIIPEGMFESFRYKCLSSYTSVKENFDKKGNIILAVSDHISKVLYLYQGEK
:..: :::: :.:. . ::... :. . . ...: : . :.. : .
KIAA01 PIFAALLGNHILPDEDLASFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVADYV--R
230 240 250 260 270 280
290 300 310 320 330 340
KIAA18 KLEEILPLGPNKALFYKGMASYLLPGQKSPWFFQKPKGVITLDKQV--ISTSSDAESREE
.... : ..:. .. ..: . :: . . . :..: : .
KIAA01 NIQDTSDL--------DAIAKDVFQHSQS----RTDDKVIRFKRAIGYYSATSKPMSFHP
290 300 310 320 330
350 360 370 380 390 400
KIAA18 VPMCSDAESRQEVPMCTGPESRREVPVYTDSEPRQEVPMCSDPEPRQEVPTCTGPESRRE
. . . .: . :. :: . : .. . . : : ::. : ..
KIAA01 PHYLAARPGPFGMPGMVPPH----VPPQMLNIP--QTSLQAKPVAPQ-VPSPGGAPGQGP
340 350 360 370 380
410 420 430 440 450 460
KIAA18 VPMC-SDPEPRQEVPMCTGPEARQEVPMYTD-SEPRQEVPMYTDSEPRQEVPMYTGSEPR
:. :.: : . . :. . : :.. . ...:.: : : . : .:: .
KIAA01 YPYSLSEPAP---LTLDTSGKNLTEQNSYSNIPHEGKHTPLYERSSPIN--PAQSGSPNH
390 400 410 420 430 440
470 480 490 500 510 520
KIAA18 QEVPMYTGPESRQEVPMYTGPESRQEVLIRTDPESRQEIMCTGHESKQEVPICTDPISKQ
. .. : . . : . :. : ..: :..: :: ..
KIAA01 VDSAYFPGSSTSSSSDNDEGSGGA------TNHISGNKIGWEKTGSHSEPQARGDPGDQT
450 460 470 480 490
530 540 550 560 570 580
KIAA18 EDSMCTHAEINQKLPVATDFEF-KLEALMC--TNPEIKQEDPTNVGPEVKQQVTMVSDTE
. . : ...: . .. .. . : . : .. : :. : . . :
KIAA01 KAEGSSTASSGSQLAEGKGSQMGTVQPIPCLLSMPTRNHMDITT--PPLPPVAP-----E
500 510 520 530 540
590 600 610 620 630 640
KIAA18 ILKVARTHHVQAESY-LVYNIMSSGEIECSNTLEDELDQALPSQAFIYRPIRQRVYSLLL
.:.::. .: .. : .......:::. . ..::: .. :: :..:::.:: ::..:.
KIAA01 VLRVAEHRHKKGLMYPYIFHVLTKGEIKIAVSIEDEANKDLPPAALLYRPVRQYVYGVLF
550 560 570 580 590 600
650 660 670 680
KIAA18 EDCQDVTSTC-LA--------------VKEWFVYPGNPLRHPDLVRPLQMTIPGGTPSLK
.. .: :: .::: .: :. . :.::. : . :.::
KIAA01 SLAESRKKTERLAFRKNRLPPEFSPVIIKEWAAYKGKSPQTPELVEALAFR-EWTCPNLK
610 620 630 640 650 660
690 700 710 720 730 740
KIAA18 ILWLNQEPEIQVRRLDTLLACFNLSSSREELQAVESP--FQALCCLLIYLFVQ---VDTL
:::.. : . ::. ..:::. :.. :. .. : ...:::.: :. :: . :
KIAA01 RLWLGKAVEDKNRRMRAFLACMR-SDTPAMLNPANVPTHLMVLCCVLRYM-VQWPGARIL
670 680 690 700 710 720
750 760 770 780 790 800
KIAA18 CLEDLHAFIAQALCLQGKSTSQLVNLQPDYINPRAVQLGSLLVRGLTTLVLVNSACGFPW
..: ::.:::: . .:: .:. . ..::..::..:.. :. ...:.::: :
KIAA01 RRQELDAFLAQALSPKLYEPDQLQELKIENLDPRGIQLSALFMSGVDMALFANDACGQPI
730 740 750 760 770 780
810 820 830 840 850 860
KIAA18 KTSDFMPWNVFDGKLFHQKYLQSEKGYAVEVLLEQNRSRLTKFHNLKAVVCKACMKENRR
:: ::::::..: :.. .
KIAA01 PWEHCCPWMYFDGKLFQSKLLKASREKTPLIDLCDGQADQAAKVEKMRQSVLEGLSFSRQ
790 800 810 820 830 840
>>KIAA1802 ( 821 res) fj21631 (821 aa)
initn: 105 init1: 58 opt: 167 Z-score: 142.4 bits: 37.4 E(): 0.0082
Smith-Waterman score: 188; 26.070% identity (49.805% similar) in 257 aa overlap (245-481:82-325)
220 230 240 250 260 270
KIAA18 REKLCESLGLCVADLPLLACLLGNDIIPEGMFESFRYKCLSSYTSVKENFDKKGNIILAV
:. . :. :...: . :: : .
KIAA18 EMDAGGLGKMIFYQKSAKLFHCHKCFFTSKMYSNVYYHITSKHASPDKWNDKPKNQLNKE
60 70 80 90 100 110
280 290 300 310 320
KIAA18 SDHISKVLYLYQGEK-KLEEILPLG-PNKALFYKGMASYLLPGQKSPWFF-----QKPKG
.: . : : . .: . : . : .. . ..: : : . .: . ::: .
KIAA18 TDPV-KSPPLPEHQKIPCNSAEPKSIPALSMETQKLGSVLSPESPKPTPLTPLEPQKPGS
120 130 140 150 160 170
330 340 350 360 370 380
KIAA18 VITLDKQVISTSSDAESREEVPMCSDAESRQEVPMCTGPESRREVPVYTDSEPRQEVPMC
:.. . :. : . . : :. : . ::.: ::.. .:: . ::.. .:.
KIAA18 VVSPELQTPLPSPEPSKPASV---SSPEPPKSVPVC---ESQKLAPVPSP-EPQKPAPVS
180 190 200 210 220
390 400 410 420 430
KIAA18 --------SDPEPRQE--VPTCTGPESRR--EVP-MCSDPEPRQEVPMCTGPEARQEVPM
:.:.:... : :: : : : . ..::: : . ::.:. .
KIAA18 PESVKATLSNPKPQKQSHFPETLGPPSASSPESPVLAASPEPWGPSPAAS-PESRKSART
230 240 250 260 270 280
440 450 460 470 480 490
KIAA18 YTDSEPRQEVPMYTDSEPRQEVPMYTGSEPRQEVPMYTGPESRQEVPMYTGPESRQEVLI
:. :::. : . :: . : . :::. .: . : : . :
KIAA18 -TSPEPRKPSPSESP-EPWKPFPAVS-PEPRRPAPAVS-PGSWKPGPPGSPRPWKSNPSA
290 300 310 320 330
500 510 520 530 540 550
KIAA18 RTDPESRQEIMCTGHESKQEVPICTDPISKQEDSMCTHAEINQKLPVATDFEFKLEALMC
KIAA18 SSGPWKPAKPAPSVSPGPWKPIPSVSPGPWKPTPSVSSASWKSSSVSPSSWKSPPASPES
340 350 360 370 380 390
917 residues in 1 query sequences
1986588 residues in 2037 library sequences
Scomplib [34.26]
start: Thu Dec 18 15:18:57 2008 done: Thu Dec 18 15:18:58 2008
Total Scan time: 0.620 Total Display time: 0.070
Function used was FASTA [version 34.26.5 April 26, 2007]