# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh26155mrp1.fasta.huge -Q ../query/KIAA1838.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1838, 917 aa
 vs ./tmplib.25089 library

1986588 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.2075+/-0.0065; mu= 16.4878+/- 0.443
 mean_var=156.4785+/-38.037, 0's: 0 Z-trim: 6  B-trim: 129 in 1/39
 Lambda= 0.102529

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0183  ( 1111 res)   ha02726                    (1111)  340 63.2 1.9e-10
KIAA1802  ( 821 res)   fj21631                     ( 821)  167 37.4  0.0082


>>KIAA0183  ( 1111 res)   ha02726                         (1111 aa)
 initn: 644 init1: 231 opt: 340  Z-score: 279.4  bits: 63.2 E(): 1.9e-10
Smith-Waterman score: 731;  24.471% identity (53.647% similar) in 850 aa overlap (16-826:2-809)

               10        20        30             40        50     
KIAA18 ILSRSSVMGVRGLQGFVGSTCPHICTVVNFKELAEHH-----RSKYPGCTPTIVVDAMCC
                      .. . ::   . :....::.       :.. :     ..:::  :
KIAA01               DYIEKHCPSAVVPVELQKLARGSLVGGGRQRPPQTPLRLLVDADNC
                             10        20        30        40      

          60          70        80        90       100       110   
KIAA18 LRYWYTP--ESWICGGQWREYFSALRDFVKTFTAAGIKLIFFFDGMVEQDKRDEWVKRRL
       :.  :     .:. :::: .... :  ..:.  ...:.:. ::.: .:. .  :::::. 
KIAA01 LHRLYGGFYTDWVSGGQWNHMLGYLAALAKACFGGNIELFVFFNGALEKARLHEWVKRQG
         50        60        70        80        90       100      

           120       130       140       150       160       170   
KIAA18 KNNREISRIFHYIKSHKEQPGRNMFFIPSGLAVFTRFALKTLGQETLCSLQEADYEVASY
       .. .  ..:  .....   : .  :. :  .:   :.::  .  ..  :...   :: ..
KIAA01 NERQTAQQIVSHVQNKGTPPPKVWFLPPVCMAHCIRLALIRFHVKVAQSIEDHHQEVIGF
        110       120       130       140       150       160      

           180       190       200           210       220         
KIAA18 GLQHNCLGILGEDTDYLIYDTCPYFSISELCL----ESLDTVMLCREKLCESLGLCVADL
         ...  :... :.:: . .   :::   : :    .:: : .   ... ..: :    .
KIAA01 CRENGFHGLVAYDSDYALCNIPYYFSAHALKLSRNGKSLTTSQYLMHEVAKQLDLNPNRF
        170       180       190       200       210       220      

     230       240       250       260       270       280         
KIAA18 PLLACLLGNDIIPEGMFESFRYKCLSSYTSVKENFDKKGNIILAVSDHISKVLYLYQGEK
       :..: :::: :.:.  . ::... :.    .     .  ...:   : . :..  :   .
KIAA01 PIFAALLGNHILPDEDLASFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVADYV--R
        230       240       250       260       270       280      

     290       300       310       320       330         340       
KIAA18 KLEEILPLGPNKALFYKGMASYLLPGQKSPWFFQKPKGVITLDKQV--ISTSSDAESREE
       ....   :         ..:. ..  ..:    .    :: . . .   :..:   : . 
KIAA01 NIQDTSDL--------DAIAKDVFQHSQS----RTDDKVIRFKRAIGYYSATSKPMSFHP
          290               300           310       320       330  

       350       360       370       380       390       400       
KIAA18 VPMCSDAESRQEVPMCTGPESRREVPVYTDSEPRQEVPMCSDPEPRQEVPTCTGPESRRE
         . .   .   .:  . :.    ::    . :  .. . . :   : ::.  :  ..  
KIAA01 PHYLAARPGPFGMPGMVPPH----VPPQMLNIP--QTSLQAKPVAPQ-VPSPGGAPGQGP
            340       350           360         370        380     

       410        420       430        440       450       460     
KIAA18 VPMC-SDPEPRQEVPMCTGPEARQEVPMYTD-SEPRQEVPMYTDSEPRQEVPMYTGSEPR
        :.  :.: :   . . :. .   :   :..  .  ...:.:  : : .  :  .::  .
KIAA01 YPYSLSEPAP---LTLDTSGKNLTEQNSYSNIPHEGKHTPLYERSSPIN--PAQSGSPNH
         390          400       410       420       430         440

         470       480       490       500       510       520     
KIAA18 QEVPMYTGPESRQEVPMYTGPESRQEVLIRTDPESRQEIMCTGHESKQEVPICTDPISKQ
        .  .. :  . .      :  .       :.  : ..:      :..:     :: .. 
KIAA01 VDSAYFPGSSTSSSSDNDEGSGGA------TNHISGNKIGWEKTGSHSEPQARGDPGDQT
              450       460             470       480       490    

         530       540        550         560       570       580  
KIAA18 EDSMCTHAEINQKLPVATDFEF-KLEALMC--TNPEIKQEDPTNVGPEVKQQVTMVSDTE
       .    . :  ...:  .   ..  .. . :  . :  .. : :.  : .   .      :
KIAA01 KAEGSSTASSGSQLAEGKGSQMGTVQPIPCLLSMPTRNHMDITT--PPLPPVAP-----E
          500       510       520       530         540            

            590        600       610       620       630       640 
KIAA18 ILKVARTHHVQAESY-LVYNIMSSGEIECSNTLEDELDQALPSQAFIYRPIRQRVYSLLL
       .:.::. .: ..  :  .......:::. . ..::: .. ::  :..:::.:: ::..:.
KIAA01 VLRVAEHRHKKGLMYPYIFHVLTKGEIKIAVSIEDEANKDLPPAALLYRPVRQYVYGVLF
       550       560       570       580       590       600       

             650                      660       670       680      
KIAA18 EDCQDVTSTC-LA--------------VKEWFVYPGNPLRHPDLVRPLQMTIPGGTPSLK
          ..  .:  ::              .::: .: :.  . :.::. : .      :.::
KIAA01 SLAESRKKTERLAFRKNRLPPEFSPVIIKEWAAYKGKSPQTPELVEALAFR-EWTCPNLK
       610       620       630       640       650        660      

        690       700       710       720         730          740 
KIAA18 ILWLNQEPEIQVRRLDTLLACFNLSSSREELQAVESP--FQALCCLLIYLFVQ---VDTL
        :::..  : . ::. ..:::.  :..   :. .. :  ...:::.: :. ::   .  :
KIAA01 RLWLGKAVEDKNRRMRAFLACMR-SDTPAMLNPANVPTHLMVLCCVLRYM-VQWPGARIL
        670       680        690       700       710        720    

             750       760       770       780       790       800 
KIAA18 CLEDLHAFIAQALCLQGKSTSQLVNLQPDYINPRAVQLGSLLVRGLTTLVLVNSACGFPW
         ..: ::.::::  .    .:: .:. . ..::..::..:.. :.   ...:.::: : 
KIAA01 RRQELDAFLAQALSPKLYEPDQLQELKIENLDPRGIQLSALFMSGVDMALFANDACGQPI
          730       740       750       760       770       780    

             810       820       830       840       850       860 
KIAA18 KTSDFMPWNVFDGKLFHQKYLQSEKGYAVEVLLEQNRSRLTKFHNLKAVVCKACMKENRR
             ::  ::::::..: :.. .                                   
KIAA01 PWEHCCPWMYFDGKLFQSKLLKASREKTPLIDLCDGQADQAAKVEKMRQSVLEGLSFSRQ
          790       800       810       820       830       840    

>>KIAA1802  ( 821 res)   fj21631                          (821 aa)
 initn: 105 init1:  58 opt: 167  Z-score: 142.4  bits: 37.4 E(): 0.0082
Smith-Waterman score: 188;  26.070% identity (49.805% similar) in 257 aa overlap (245-481:82-325)

          220       230       240       250       260       270    
KIAA18 REKLCESLGLCVADLPLLACLLGNDIIPEGMFESFRYKCLSSYTSVKENFDKKGNIILAV
                                     :. .  :.  :...:  .  ::  : .   
KIAA18 EMDAGGLGKMIFYQKSAKLFHCHKCFFTSKMYSNVYYHITSKHASPDKWNDKPKNQLNKE
              60        70        80        90       100       110 

          280        290        300       310       320            
KIAA18 SDHISKVLYLYQGEK-KLEEILPLG-PNKALFYKGMASYLLPGQKSPWFF-----QKPKG
       .: . :   : . .:   .   : . :  ..  . ..: : : . .:  .     ::: .
KIAA18 TDPV-KSPPLPEHQKIPCNSAEPKSIPALSMETQKLGSVLSPESPKPTPLTPLEPQKPGS
              120       130       140       150       160       170

       330       340       350       360       370       380       
KIAA18 VITLDKQVISTSSDAESREEVPMCSDAESRQEVPMCTGPESRREVPVYTDSEPRQEVPMC
       :.. . :.   : .  .   :   :. :  . ::.:   ::.. .:: .  ::.. .:. 
KIAA18 VVSPELQTPLPSPEPSKPASV---SSPEPPKSVPVC---ESQKLAPVPSP-EPQKPAPVS
              180       190          200          210        220   

               390         400          410       420       430    
KIAA18 --------SDPEPRQE--VPTCTGPESRR--EVP-MCSDPEPRQEVPMCTGPEARQEVPM
               :.:.:...   :   :: :    : : . ..:::    :  . ::.:. .  
KIAA18 PESVKATLSNPKPQKQSHFPETLGPPSASSPESPVLAASPEPWGPSPAAS-PESRKSART
           230       240       250       260       270        280  

          440       450       460       470       480       490    
KIAA18 YTDSEPRQEVPMYTDSEPRQEVPMYTGSEPRQEVPMYTGPESRQEVPMYTGPESRQEVLI
        :. :::.  :  .  :: .  :  .  :::. .:  . : : .  :             
KIAA18 -TSPEPRKPSPSESP-EPWKPFPAVS-PEPRRPAPAVS-PGSWKPGPPGSPRPWKSNPSA
             290        300        310        320       330        

          500       510       520       530       540       550    
KIAA18 RTDPESRQEIMCTGHESKQEVPICTDPISKQEDSMCTHAEINQKLPVATDFEFKLEALMC
                                                                   
KIAA18 SSGPWKPAKPAPSVSPGPWKPIPSVSPGPWKPTPSVSSASWKSSSVSPSSWKSPPASPES
      340       350       360       370       380       390        




917 residues in 1 query   sequences
1986588 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:18:57 2008 done: Thu Dec 18 15:18:58 2008
 Total Scan time:  0.620 Total Display time:  0.070

Function used was FASTA [version 34.26.5 April 26, 2007]