hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14085157/chunk_1/iprscan-20080502-14085157.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1835 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00368 168.8 5.5e-46 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00368 1/9 84 111 .. 1 28 [] 26.9 0.0028 SM00368 2/9 147 174 .. 1 28 [] 24.7 0.013 SM00368 3/9 177 204 .. 1 28 [] 25.1 0.0098 SM00368 4/9 215 242 .. 1 28 [] 0.0 2.6e+02 SM00368 5/9 243 270 .. 1 28 [] 7.0 27 SM00368 6/9 271 298 .. 1 28 [] 33.1 3.7e-05 SM00368 7/9 299 326 .. 1 28 [] 5.2 49 SM00368 8/9 328 355 .. 1 28 [] 12.1 5.3 SM00368 9/9 356 383 .. 1 28 [] 34.6 1.4e-05 Alignments of top-scoring domains: SM00368: domain 1 of 9, from 84 to 111: score 26.9, E = 0.0028 *->npsLreLdLsnNklgdeGaraLaeaLks<-* sL+ L+L++N++g e ar++a+aL+ KIAA1835 84 FDSLEALRLEGNTVGVEAARVIAKALEK 111 SM00368: domain 2 of 9, from 147 to 174: score 24.7, E = 0.013 *->npsLreLdLsnNklgdeGaraLaeaLks<-* L eLdLs+N +g++G++ + ++Lks KIAA1835 147 GAQLVELDLSDNAFGPDGVQGFEALLKS 174 SM00368: domain 3 of 9, from 177 to 204: score 25.1, E = 0.0098 *->npsLreLdLsnNklgdeGaraLaeaLks<-* +L+eL L+n++ g+ G++ La+aL++ KIAA1835 177 CFTLQELKLNNCGMGIGGGKILAAALTE 204 SM00368: domain 4 of 9, from 215 to 242: score 0.0, E = 2.6e+02 *->npsLreLdLsnNklgdeGaraLaeaLks<-* L++ + N l +Ga aLaea + KIAA1835 215 PLALKVFVAGRNRLENDGATALAEAFRV 242 SM00368: domain 5 of 9, from 243 to 270: score 7.0, E = 27 *->npsLreLdLsnNklgdeGaraLaeaLks<-* +L+e + +N++ G+ aLa+a + KIAA1835 243 IGTLEEVHMPQNGINHPGITALAQAFAV 270 SM00368: domain 6 of 9, from 271 to 298: score 33.1, E = 3.7e-05 *->npsLreLdLsnNklgdeGaraLaeaLks<-* np Lr+++L++N+++++Ga a+ae+Lk KIAA1835 271 NPLLRVINLNDNTFTEKGAVAMAETLKT 298 SM00368: domain 7 of 9, from 299 to 326: score 5.2, E = 49 *->npsLreLdLsnNklgdeGaraLaeaLks<-* ++ ++++ +++ + +Ga a+a a++ KIAA1835 299 LRQVEVINFGDCLVRSKGAVAIADAIRG 326 SM00368: domain 8 of 9, from 328 to 355: score 12.1, E = 5.3 *->npsLreLdLsnNklgdeGaraLaeaLks<-* +p+L+eL+Ls + + + a a aea ++ KIAA1835 328 LPKLKELNLSFCEIKRDAALAVAEAMAD 355 SM00368: domain 9 of 9, from 356 to 383: score 34.6, E = 1.4e-05 *->npsLreLdLsnNklgdeGaraLaeaLks<-* + L++LdL++N+lg+eG+ +L e+L+ KIAA1835 356 KAELEKLDLNGNTLGEEGCEQLQEVLEG 383 //