# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh08795s1.fasta.huge -Q ../query/KIAA1835.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1835, 623 aa vs ./tmplib.25089 library 1986882 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 10.9435+/-0.0094; mu= -17.1751+/- 0.632 mean_var=358.3561+/-86.368, 0's: 0 Z-trim: 6 B-trim: 5 in 1/39 Lambda= 0.067751 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0835 ( 1167 res) hj05861 (1167) 236 37.5 0.0076 >>KIAA0835 ( 1167 res) hj05861 (1167 aa) initn: 977 init1: 220 opt: 236 Z-score: 142.9 bits: 37.5 E(): 0.0076 Smith-Waterman score: 273; 28.302% identity (58.176% similar) in 318 aa overlap (229-537:153-430) 200 210 220 230 240 250 KIAA18 AAALTECHRKSSAQGKPLALKVFVAGRNRLENDGATALAEAFRVIGTLEEVHMPQNGINH :..:. ::: .. : .:.: :... KIAA08 HPLKLALDEGYGVDSDGSEDTEVKDASVSDESEGTLEGAEA-ETSGQ-DEIHRPETA--- 130 140 150 160 170 260 270 280 290 300 310 KIAA18 PGITALAQAFAVNPLLRVINLNDNTFTEKGAVAMAETLKTLRQV--EVI---NFGDCLVR : . . . :. ::. . . .... .. .: .: .: :. :.. ..:. KIAA08 EGRSPVKSHFGSNPIGSATASSKGSYSSYQGI-IATSLLNLGQIAEETLVEEDLGQAAKP 180 190 200 210 220 230 320 330 340 350 360 370 KIAA18 SKGAVAI-ADAIRGGLPKLKELNLSFCEIKRDAALAVAEAMADKAELEKLDLNGNTLGEE . : : . .: .:. . : .: : :. . : :.:. ..... :: ..: . KIAA08 GPGIVHLLQEAAEGAASEEGEKGL-F--IQPEDAEEVVEVTTERSQ----DLCPQSLEDA 240 250 260 270 280 380 390 400 410 420 430 KIAA18 GCEQLQEVLEGFNMAKVLASLSDDEDEEEEEEGEEEEEEAEEEEEEDEEEEEEEEEEEEE . : :. .. .:. ..:::::::: :::::. ::::::.::::::::::::: KIAA08 ASE------ESSKQKGILS--HEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEE 290 300 310 320 330 340 440 450 460 470 480 KIAA18 EPQQRGQGEKSATPS---RKILDPNTGEPAPVLSSPPPADVSTFLAFPSPEKLLRLGPKS : ... . :. :.:. .. . .... :: : .: :::. :. KIAA08 EEEEEEEEEEEAAPDVIFQEDTSHTSAQKAPELRGPES---------PSPK------PEY 350 360 370 380 490 500 510 520 530 540 KIAA18 SVLIAQQTDTSDPEKVVSAFLKVSSVFKDEATVRMAVQDAVDALMQKAFNSSSFNSNTFL ::.. ..: . : . : .:. ::. .. . . .:...: KIAA08 SVIVEVRSDDDKDEDTHSR----KSTVTDESEMQDMMTRGNLGLLEQAIALKAEQVRTVC 390 400 410 420 430 440 550 560 570 580 590 600 KIAA18 TRLLVHMGLLKSEDKVKAIANLYGPLMALNHMVQQDYFPKALAPLLLAFVTKPNSALESC KIAA08 EPGCPPAEQSQLGLGEPGKAAKPLDTVRKSYYSKDPSRAEKREIKCPTPGCDGTGHVTGL 450 460 470 480 490 500 623 residues in 1 query sequences 1986882 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:18:51 2008 done: Thu Dec 18 15:18:52 2008 Total Scan time: 0.530 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]