hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14071382/chunk_1/iprscan-20080502-14071382.nocrc
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Query sequence: KIAA1834
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF04727.4.fs ELMO/CED-12 family                           173.6    5.5e-50   1
PF04727.4.ls ELMO/CED-12 family                           175.5    1.2e-49   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF04727.4.fs   1/1     315   489 ..     1   184 []   173.6  5.5e-50
PF04727.4.ls   1/1     315   489 ..     1   184 []   175.5  1.2e-49

Alignments of top-scoring domains:
PF04727.4.fs: domain 1 of 1, from 315 to 489: score 173.6, E = 5.5e-50
                   *->pdhqelLkalwkllfpdatnevqkilDiieltgGsGaG..nvlvSeq
                      + +++ + +l++++f+ +        D     +GsG  ++    ++ 
    KIAA1834   315    QAQRDIIFELRRIAFDAE-------SDP-SNAPGSGTEkrKAMYTKD 353  

                   WkemGFQGdidPsTDFRGcPPGfLaLenLlyFAenyptslqrllskqrgd
                   +k +GF   i+P+ DF  +PPG+LaL+n+ly+A+  ++ + r++++++++
    KIAA1834   354 YKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSR 403  

                   raeweyPFAvvgINiTfiliqlLrlgalkpefnrlavFlkmlfetesaFd
                   ++++e+PF++  I++T++l+++L +g+l +e+ +    ++m+f++++aF+
    KIAA1834   404 EDKHECPFGRSAIELTKMLCEILQVGELPNEGRNDY--HPMFFTHDRAFE 451  

                   alyCiafhlfdrqWlemqartimefntVlksvreqlere<-*
                   +l+ i+ +l++++W+em+a t+++fn+V+++vreq+ r+   
    KIAA1834   452 ELFGICIQLLNKTWKEMRA-TAEDFNKVMQVVREQITRA    489  

PF04727.4.ls: domain 1 of 1, from 315 to 489: score 175.5, E = 1.2e-49
                   *->pdhqelLkalwkllfpdatnevqkilDiieltgGsGaG..nvlvSeq
                      + +++ + +l++++f+ +        D     +GsG  ++    ++ 
    KIAA1834   315    QAQRDIIFELRRIAFDAE-------SDP-SNAPGSGTEkrKAMYTKD 353  

                   WkemGFQGdidPsTDFRGcPPGfLaLenLlyFAenyptslqrllskqrgd
                   +k +GF   i+P+ DF  +PPG+LaL+n+ly+A+  ++ + r++++++++
    KIAA1834   354 YKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSR 403  

                   raeweyPFAvvgINiTfiliqlLrlgalkpefnrlavFlkmlfetesaFd
                   ++++e+PF++  I++T++l+++L +g+l +e+ +    ++m+f++++aF+
    KIAA1834   404 EDKHECPFGRSAIELTKMLCEILQVGELPNEGRNDY--HPMFFTHDRAFE 451  

                   alyCiafhlfdrqWlemqartimefntVlksvreqlere<-*
                   +l+ i+ +l++++W+em+a t+++fn+V+++vreq+ r+   
    KIAA1834   452 ELFGICIQLLNKTWKEMRA-TAEDFNKVMQVVREQITRA    489  

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