# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh02469mrp1.fasta.huge -Q ../query/KIAA1834.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1834, 725 aa
 vs ./tmplib.25089 library

1986780 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.5032+/-0.00511; mu= 18.6143+/- 0.349
 mean_var=97.5267+/-22.831, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.129871

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0281  ( 271 res)   ha06725                     ( 271) 1348 262.8 3.2e-71


>>KIAA0281  ( 271 res)   ha06725                          (271 aa)
 initn: 1341 init1: 1341 opt: 1348  Z-score: 1370.6  bits: 262.8 E(): 3.2e-71
Smith-Waterman score: 1348;  74.242% identity (90.909% similar) in 264 aa overlap (465-722:5-268)

          440       450       460       470             480        
KIAA18 GRNDYHPMFFTHDRAFEELFGICIQLLNKTWKEMRATAEDFNK------VMQVVREQITR
                                     :...: .   ...      :::::.::. :
KIAA02                           VALWWQQLRISICGWERWTYGSLVMQVVKEQVMR
                                         10        20        30    

      490       500       510       520       530       540        
KIAA18 ALPSKPNSLDQFKSKLRSLSYSEILRLRQSERMSQDDFQSPPIVELREKIQPEILELIKQ
       :: .::.:::::::::..:::.:::..::::::.:.:::: ::.::.:::::::::::::
KIAA02 ALTTKPSSLDQFKSKLQNLSYTEILKIRQSERMNQEDFQSRPILELKEKIQPEILELIKQ
           40        50        60        70        80        90    

      550       560       570       580       590       600        
KIAA18 QRLNRLCEGSSFRKIGNRRRQERFWYCRLALNHKVLHYGDLDDNPQGEVTFESLQEKIPV
       :::::: ::. :::.. ::::..::::::. ::::::::::...:::::  .:::.:.::
KIAA02 QRLNRLVEGTCFRKLNARRRQDKFWYCRLSPNHKVLHYGDLEESPQGEVPHDSLQDKLPV
          100       110       120       130       140       150    

      610       620       630       640       650       660        
KIAA18 ADIKAIVTGKDCPHMKEKSALKQNKEVLELAFSILYDPDETLNFIAPNKYEYCIWIDGLS
       :::::.::::::::::::.:::::::::::::::::: .  ::::::.:.::::: :::.
KIAA02 ADIKAVVTGKDCPHMKEKGALKQNKEVLELAFSILYDSNCQLNFIAPDKHEYCIWTDGLN
          160       170       180       190       200       210    

      670       680       690       700       710       720     
KIAA18 ALLGKDMSSELTKSDLDTLLSMEMKLRLLDLENIQIPEAPPPIPKEPSSYDFVYHYG
       ::::::: :.::..:::::::::.:::::::::::::.::::::::::.:::::   
KIAA02 ALLGKDMMSDLTRNDLDTLLSMEIKLRLLDLENIQIPDAPPPIPKEPSNYDFVYDCN
          220       230       240       250       260       270 




725 residues in 1 query   sequences
1986780 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:18:49 2008 done: Thu Dec 18 15:18:50 2008
 Total Scan time:  0.550 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]