hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14003193/chunk_1/iprscan-20080502-14003193.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1830
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00085.10.ls Thioredoxin                                 134.7    2.3e-37   1
PF00085.10.fs Thioredoxin                                 132.8    8.9e-37   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00085.10.fs   1/1      58   161 ..     1   111 []   132.8  8.9e-37
PF00085.10.ls   1/1      58   161 ..     1   111 []   134.7  2.3e-37

Alignments of top-scoring domains:
PF00085.10.fs: domain 1 of 1, from 58 to 161: score 132.8, E = 8.9e-37
                   *->vvlvltdenFdeevaksdekkpVLVdFYApWCGpCKmlAPeyeklAq
                      + ++  de+F+e  ++    +++LVdFYApWCG+CK+l+P++ + + 
    KIAA1830    58    GFVEDLDESFKENRND----DIWLVDFYAPWCGHCKKLEPIWNEVGL 100  

                   eykdetsdvkfaKVDaDenpdlaskygVrgfPTlkffknGkkvepidyvG
                   e+k  +s+vk+ K+Da+  +++as++gVrg+PT+k++k+ + +   +y G
    KIAA1830   101 EMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKG-DLAY--NYRG 147  

                   aRtkddLvafikkh<-*
                   +Rtkdd+++f  +    
    KIAA1830   148 PRTKDDIIEFAHRV    161  

PF00085.10.ls: domain 1 of 1, from 58 to 161: score 134.7, E = 2.3e-37
                   *->vvlvltdenFdeevaksdekkpVLVdFYApWCGpCKmlAPeyeklAq
                      + ++  de+F+e  ++    +++LVdFYApWCG+CK+l+P++ + + 
    KIAA1830    58    GFVEDLDESFKENRND----DIWLVDFYAPWCGHCKKLEPIWNEVGL 100  

                   eykdetsdvkfaKVDaDenpdlaskygVrgfPTlkffknGkkvepidyvG
                   e+k  +s+vk+ K+Da+  +++as++gVrg+PT+k++k+ + +   +y G
    KIAA1830   101 EMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKG-DLAY--NYRG 147  

                   aRtkddLvafikkh<-*
                   +Rtkdd+++f  +    
    KIAA1830   148 PRTKDDIIEFAHRV    161  

//