hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13553920/chunk_1/iprscan-20080502-13553920.nocrc
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Query sequence: KIAA1827
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 420.6   8.4e-122  15

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/15     54    76 ..     1    23 []    27.0   0.0026
SM00355      2/15     82   104 ..     1    23 []    29.5  0.00047
SM00355      3/15    110   132 ..     1    23 []    30.6  0.00021
SM00355      4/15    138   160 ..     1    23 []    29.6  0.00044
SM00355      5/15    166   188 ..     1    23 []    28.2   0.0011
SM00355      6/15    194   216 ..     1    23 []    29.0  0.00065
SM00355      7/15    222   244 ..     1    23 []    26.8    0.003
SM00355      8/15    250   272 ..     1    23 []    29.3  0.00053
SM00355      9/15    278   300 ..     1    23 []    23.7    0.027
SM00355     10/15    306   328 ..     1    23 []    29.1   0.0006
SM00355     11/15    334   356 ..     1    23 []    25.7   0.0062
SM00355     12/15    362   384 ..     1    23 []    31.1  0.00015
SM00355     13/15    390   412 ..     1    23 []    24.4    0.016
SM00355     14/15    418   440 ..     1    23 []    27.0   0.0026
SM00355     15/15    446   468 ..     1    23 []    29.7   0.0004

Alignments of top-scoring domains:
SM00355: domain 1 of 15, from 54 to 76: score 27.0, E = 0.0026
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk+fs  + L+ H r+H   
    KIAA1827    54    YKCSE-CGKVFSCSsKLVIHRRMH    76   

SM00355: domain 2 of 15, from 82 to 104: score 29.5, E = 0.00047
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk fss ++L +H+r+H   
    KIAA1827    82    YKCHE-CGKLFSSNsNLSQHQRIH    104  

SM00355: domain 3 of 15, from 110 to 132: score 30.6, E = 0.00021
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C+k+f+s + L +H+r+H   
    KIAA1827   110    YKCHE-CDKVFRSSsKLAQHQRIH    132  

SM00355: domain 4 of 15, from 138 to 160: score 29.6, E = 0.00044
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C+k+f++  +L+rH+++H   
    KIAA1827   138    YKCHE-CDKVFNQIaHLVRHQKIH    160  

SM00355: domain 5 of 15, from 166 to 188: score 28.2, E = 0.0011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk+fs+++ L +H+ vH   
    KIAA1827   166    YSCNK-CGKVFSRHsYLAEHQTVH    188  

SM00355: domain 6 of 15, from 194 to 216: score 29.0, E = 0.00065
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk fs +++L+ H+ +H   
    KIAA1827   194    YKCEE-CGKAFSVRsSLITHQLIH    216  

SM00355: domain 7 of 15, from 222 to 244: score 26.8, E = 0.003
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C+k+f +k  L+ H+r+H   
    KIAA1827   222    YKCKE-CDKVFGRKcFLTSHQRIH    244  

SM00355: domain 8 of 15, from 250 to 272: score 29.3, E = 0.00053
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk fs+k++L+rH ++H   
    KIAA1827   250    YGCSQ-CGKIFSQKsDLIRHRKTH    272  

SM00355: domain 9 of 15, from 278 to 300: score 23.7, E = 0.027
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cg  f+  ++L+ H  +H   
    KIAA1827   278    YKCNK-CGTAFREFsDLTAHFLIH    300  

SM00355: domain 10 of 15, from 306 to 328: score 29.1, E = 0.0006
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+f+ k++L+ H r+H   
    KIAA1827   306    YECKE-CGKVFRYKsSLTSHHRIH    328  

SM00355: domain 11 of 15, from 334 to 356: score 25.7, E = 0.0062
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC+  Cgk+fs+ ++L+ H+++H   
    KIAA1827   334    YKCNR-CGKVFSRSsNLVCHQKIH    356  

SM00355: domain 12 of 15, from 362 to 384: score 31.1, E = 0.00015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk+f++++ L+rH+ +H   
    KIAA1827   362    YKCNQ-CGKVFNQAsYLTRHQIIH    384  

SM00355: domain 13 of 15, from 390 to 412: score 24.4, E = 0.016
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  + L+ H+ +H   
    KIAA1827   390    YRCSK-CGKAFRGCsGLTAHLAIH    412  

SM00355: domain 14 of 15, from 418 to 440: score 27.0, E = 0.0026
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk f++k++L++H r+H   
    KIAA1827   418    HECKE-CGKIFTQKsSLTNHHRIH    440  

SM00355: domain 15 of 15, from 446 to 468: score 29.7, E = 0.0004
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C+k+fs+ ++L +H+rvH   
    KIAA1827   446    YKCTL-CSKVFSHNsDLAQHQRVH    468  

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