hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13553920/chunk_1/iprscan-20080502-13553920.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1827 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 490.9 1.4e-144 15 PF00096.16.fs Zinc finger, C2H2 type 461.4 1.1e-135 15 PF01096.9.fs Transcription factor S-II (TFIIS) 98.1 1.1e-29 16 PF01286.9.fs XPA protein N-terminal 57.7 1.1e-15 14 PF02892.5.fs BED zinc finger 33.9 2.6e-09 7 PF07754.2.fs Domain of unknown function (DUF1610) 30.9 2.9e-07 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 1/15 54 76 .. 1 24 [] 26.8 7.2e-05 PF00096.16.fs 1/15 54 76 .. 1 24 [] 24.8 6.2e-05 PF00096.16.ls 2/15 82 104 .. 1 24 [] 36.2 1.1e-07 PF00096.16.fs 2/15 82 104 .. 1 24 [] 34.2 2.8e-07 PF00096.16.ls 3/15 110 132 .. 1 24 [] 35.0 2.4e-07 PF00096.16.fs 3/15 110 132 .. 1 24 [] 33.0 5.6e-07 PF00096.16.ls 4/15 138 160 .. 1 24 [] 33.2 8.7e-07 PF00096.16.fs 4/15 138 160 .. 1 24 [] 31.2 1.6e-06 PF00096.16.ls 5/15 166 188 .. 1 24 [] 33.0 9.4e-07 PF00096.16.fs 5/15 166 188 .. 1 24 [] 31.1 1.7e-06 PF00096.16.fs 6/15 194 216 .. 1 24 [] 34.0 3.2e-07 PF00096.16.ls 6/15 194 216 .. 1 24 [] 36.0 1.2e-07 PF00096.16.fs 7/15 222 244 .. 1 24 [] 25.6 3.9e-05 PF00096.16.ls 7/15 222 244 .. 1 24 [] 27.6 4.2e-05 PF00096.16.ls 8/15 250 272 .. 1 24 [] 34.5 3.4e-07 PF00096.16.fs 8/15 250 272 .. 1 24 [] 32.6 7.3e-07 PF00096.16.ls 9/15 278 300 .. 1 24 [] 26.3 9.8e-05 PF00096.16.fs 9/15 278 300 .. 1 24 [] 24.4 8e-05 PF00096.16.fs 10/15 306 328 .. 1 24 [] 32.5 7.6e-07 PF00096.16.ls 10/15 306 328 .. 1 24 [] 34.5 3.5e-07 PF00096.16.ls 11/15 334 356 .. 1 24 [] 34.9 2.6e-07 PF00096.16.fs 11/15 334 356 .. 1 24 [] 32.9 6e-07 PF00096.16.ls 12/15 362 384 .. 1 24 [] 36.6 8.2e-08 PF00096.16.fs 12/15 362 384 .. 1 24 [] 34.6 2.3e-07 PF00096.16.ls 13/15 390 412 .. 1 24 [] 30.3 6.2e-06 PF00096.16.fs 13/15 390 412 .. 1 24 [] 28.3 8.2e-06 PF00096.16.fs 14/15 418 440 .. 1 24 [] 30.6 2.3e-06 PF00096.16.ls 14/15 418 440 .. 1 24 [] 32.5 1.3e-06 PF00096.16.fs 15/15 446 468 .. 1 24 [] 31.7 1.2e-06 PF00096.16.ls 15/15 446 468 .. 1 24 [] 33.6 6.3e-07 Alignments of top-scoring domains: PF00096.16.ls: domain 1 of 15, from 54 to 76: score 26.8, E = 7.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +s L H+r+H KIAA1827 54 YKCS-ECGKVFSCSSKLVIHRRMH 76 PF00096.16.fs: domain 1 of 15, from 54 to 76: score 24.8, E = 6.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +s L H+r+H KIAA1827 54 YKCS-ECGKVFSCSSKLVIHRRMH 76 PF00096.16.ls: domain 2 of 15, from 82 to 104: score 36.2, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs++snL +H+r+H KIAA1827 82 YKCH-ECGKLFSSNSNLSQHQRIH 104 PF00096.16.fs: domain 2 of 15, from 82 to 104: score 34.2, E = 2.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs++snL +H+r+H KIAA1827 82 YKCH-ECGKLFSSNSNLSQHQRIH 104 PF00096.16.ls: domain 3 of 15, from 110 to 132: score 35.0, E = 2.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+++s L +H+r+H KIAA1827 110 YKCH-ECDKVFRSSSKLAQHQRIH 132 PF00096.16.fs: domain 3 of 15, from 110 to 132: score 33.0, E = 5.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+++s L +H+r+H KIAA1827 110 YKCH-ECDKVFRSSSKLAQHQRIH 132 PF00096.16.ls: domain 4 of 15, from 138 to 160: score 33.2, E = 8.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F++ ++L rH+++H KIAA1827 138 YKCH-ECDKVFNQIAHLVRHQKIH 160 PF00096.16.fs: domain 4 of 15, from 138 to 160: score 31.2, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F++ ++L rH+++H KIAA1827 138 YKCH-ECDKVFNQIAHLVRHQKIH 160 PF00096.16.ls: domain 5 of 15, from 166 to 188: score 33.0, E = 9.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr+s L H+ +H KIAA1827 166 YSCN-KCGKVFSRHSYLAEHQTVH 188 PF00096.16.fs: domain 5 of 15, from 166 to 188: score 31.1, E = 1.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr+s L H+ +H KIAA1827 166 YSCN-KCGKVFSRHSYLAEHQTVH 188 PF00096.16.fs: domain 6 of 15, from 194 to 216: score 34.0, E = 3.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +s+L +H+ +H KIAA1827 194 YKCE-ECGKAFSVRSSLITHQLIH 216 PF00096.16.ls: domain 6 of 15, from 194 to 216: score 36.0, E = 1.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +s+L +H+ +H KIAA1827 194 YKCE-ECGKAFSVRSSLITHQLIH 216 PF00096.16.fs: domain 7 of 15, from 222 to 244: score 25.6, E = 3.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F rk L++H+r+H KIAA1827 222 YKCK-ECDKVFGRKCFLTSHQRIH 244 PF00096.16.ls: domain 7 of 15, from 222 to 244: score 27.6, E = 4.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F rk L++H+r+H KIAA1827 222 YKCK-ECDKVFGRKCFLTSHQRIH 244 PF00096.16.ls: domain 8 of 15, from 250 to 272: score 34.5, E = 3.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk Fs+ks+L rH++tH KIAA1827 250 YGCS-QCGKIFSQKSDLIRHRKTH 272 PF00096.16.fs: domain 8 of 15, from 250 to 272: score 32.6, E = 7.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk Fs+ks+L rH++tH KIAA1827 250 YGCS-QCGKIFSQKSDLIRHRKTH 272 PF00096.16.ls: domain 9 of 15, from 278 to 300: score 26.3, E = 9.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg++F+ s+L++H +H KIAA1827 278 YKCN-KCGTAFREFSDLTAHFLIH 300 PF00096.16.fs: domain 9 of 15, from 278 to 300: score 24.4, E = 8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg++F+ s+L++H +H KIAA1827 278 YKCN-KCGTAFREFSDLTAHFLIH 300 PF00096.16.fs: domain 10 of 15, from 306 to 328: score 32.5, E = 7.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ ks+L++H r+H KIAA1827 306 YECK-ECGKVFRYKSSLTSHHRIH 328 PF00096.16.ls: domain 10 of 15, from 306 to 328: score 34.5, E = 3.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ ks+L++H r+H KIAA1827 306 YECK-ECGKVFRYKSSLTSHHRIH 328 PF00096.16.ls: domain 11 of 15, from 334 to 356: score 34.9, E = 2.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ Cgk+Fsr+snL H+++H KIAA1827 334 YKCN-RCGKVFSRSSNLVCHQKIH 356 PF00096.16.fs: domain 11 of 15, from 334 to 356: score 32.9, E = 6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ Cgk+Fsr+snL H+++H KIAA1827 334 YKCN-RCGKVFSRSSNLVCHQKIH 356 PF00096.16.ls: domain 12 of 15, from 362 to 384: score 36.6, E = 8.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++ s L+rH+ +H KIAA1827 362 YKCN-QCGKVFNQASYLTRHQIIH 384 PF00096.16.fs: domain 12 of 15, from 362 to 384: score 34.6, E = 2.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++ s L+rH+ +H KIAA1827 362 YKCN-QCGKVFNQASYLTRHQIIH 384 PF00096.16.ls: domain 13 of 15, from 390 to 412: score 30.3, E = 6.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ s L++Hl +H KIAA1827 390 YRCS-KCGKAFRGCSGLTAHLAIH 412 PF00096.16.fs: domain 13 of 15, from 390 to 412: score 28.3, E = 8.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ s L++Hl +H KIAA1827 390 YRCS-KCGKAFRGCSGLTAHLAIH 412 PF00096.16.fs: domain 14 of 15, from 418 to 440: score 30.6, E = 2.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk F++ks+L++H r+H KIAA1827 418 HECK-ECGKIFTQKSSLTNHHRIH 440 PF00096.16.ls: domain 14 of 15, from 418 to 440: score 32.5, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk F++ks+L++H r+H KIAA1827 418 HECK-ECGKIFTQKSSLTNHHRIH 440 PF00096.16.fs: domain 15 of 15, from 446 to 468: score 31.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ C k+Fs++s+L +H+r+H KIAA1827 446 YKCT-LCSKVFSHNSDLAQHQRVH 468 PF00096.16.ls: domain 15 of 15, from 446 to 468: score 33.6, E = 6.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ C k+Fs++s+L +H+r+H KIAA1827 446 YKCT-LCSKVFSHNSDLAQHQRVH 468 //