hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13483558/chunk_1/iprscan-20080502-13483558.nocrc
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Query sequence: KIAA1823
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00249                                                  42.4    6.1e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00249    1/2      93   144 ..     1    39 []    19.4     0.51
SM00249    2/2     291   342 ..     1    39 []    23.0    0.042

Alignments of top-scoring domains:
SM00249: domain 1 of 2, from 93 to 144: score 19.4, E = 0.51
                   *->yC.vCgk.g.llqCd.kgCdrwyHv.Clgpple.......epdg.wy
                      +C++C+ +g +++Cd k+C r yH++C+  ++ + +++++      y
    KIAA1823    93    MCsLCHCpGaTIGCDvKTCHRTYHYhCALHDKAqirekpsQGIYmVY 139  

                   CprCk<-*
                   C ++k   
    KIAA1823   140 CRKHK    144  

SM00249: domain 2 of 2, from 291 to 342: score 23.0, E = 0.042
                   *->yC.vCgk.g.llqCd.kgCdrwyHv.Clgpple.......epdg.wy
                       C++C ++g +++C+ k C + yH++C   ++ +  ++ +    + y
    KIAA1823   291    KCtLCSQpGaTIGCEiKACVKTYHYhCGVQDKAkyienmsRGIYkLY 337  

                   CprCk<-*
                   C++++   
    KIAA1823   338 CKNHS    342  

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