# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj18328.fasta.huge -Q ../query/KIAA1823.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1823, 377 aa vs ./tmplib.25089 library 1987128 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.5472+/-0.00597; mu= 11.5209+/- 0.406 mean_var=135.7120+/-32.347, 0's: 0 Z-trim: 6 B-trim: 0 in 0/40 Lambda= 0.110094 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1333 ( 741 res) fh15412 ( 741) 295 58.1 1.8e-09 KIAA0304 ( 2415 res) af07172 (2415) 211 45.4 3.9e-05 KIAA0215 ( 857 res) ha02776 ( 857) 157 36.3 0.0078 >>KIAA1333 ( 741 res) fh15412 (741 aa) initn: 265 init1: 237 opt: 295 Z-score: 261.9 bits: 58.1 E(): 1.8e-09 Smith-Waterman score: 295; 31.410% identity (65.385% similar) in 156 aa overlap (18-165:38-188) 10 20 30 40 KIAA18 DLKWHSKGNLKIMSSSVEQKKGPTRQRKCGFCKSNRD--KECGQLLI :.: : ... : ::... : .. :. KIAA13 SRSACPDVQRAGKSGTEALELLPSSPCKMNESKPGDSQNLACVFCRKHDDCPNKYGEKKT 10 20 30 40 50 60 50 60 70 80 90 100 KIAA18 SENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIG .:. ....:. :.:.::.. . ...:.. :: :::..::..:..:: : .:. ::.:: KIAA13 KEKWNLTVHYYCLLMSSGIWQRGKEEEGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIG 70 80 90 100 110 120 110 120 130 140 150 KIAA18 CDVKTCHRTYHYHCALHDKAQIREKPSQ--GIYMVYCRKHKK----TAHNSEADLEESFN : . :.:.::. :.:. :: : : . .: :. :..: . .: .. KIAA13 CVAPRCKRSYHFPCGLQ-----RECIFQFTGNFASFCWDHRPVQIITSNNYRESLPCTIC 130 140 150 160 170 180 160 170 180 190 200 210 KIAA18 EHELEPSSPKSKKKSRKGRPRKTNFKGLSEDTRSTSSHGTDEMESSSYRDRSPHRSSPSD . .:: KIAA13 LEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGI 190 200 210 220 230 240 >>KIAA0304 ( 2415 res) af07172 (2415 aa) initn: 191 init1: 155 opt: 211 Z-score: 184.1 bits: 45.4 E(): 3.9e-05 Smith-Waterman score: 231; 25.000% identity (64.286% similar) in 140 aa overlap (204-342:1261-1386) 180 190 200 210 220 230 KIAA18 SRKGRPRKTNFKGLSEDTRSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFC-HVGEE :.... ..: : . .:..: . :. KIAA03 VLPPSLDHVYAQWRQQEPETPESGQPPGDPSAAFQGKDPAAFSHLEDPRQCALCLKYGDA 1240 1250 1260 1270 1280 1290 240 250 260 270 280 290 KIAA18 ENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKC ... :.: .. ... .: .: ..:. . : .: ..:.: . ::..:.: KIAA03 DSKEAGRL-LYIGQNEWTHVNCAIWSAEVF--------EENDGSLKNVHAAVARGRQMRC 1300 1310 1320 1330 1340 300 310 320 330 340 350 KIAA18 TLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDE :: .::::.:: ...:....:. :. .:.: . . :..:..:. KIAA03 ELCLKPGATVGCCLSSCLSNFHFMCA---RASYC--IFQDDKKVFCQKHTDLLDGKEIVN 1350 1360 1370 1380 1390 360 370 KIAA18 ERESKSRGKVEIDQQQLTQQQLNGN KIAA03 PDGFDVLRRVYVDFEGINFKRKFLTGLEPDAINVLIGSIRIDSLGTLSDLSDCEGRLFPI 1400 1410 1420 1430 1440 1450 >>KIAA0215 ( 857 res) ha02776 (857 aa) initn: 67 init1: 41 opt: 157 Z-score: 142.7 bits: 36.3 E(): 0.0078 Smith-Waterman score: 157; 23.952% identity (50.898% similar) in 167 aa overlap (214-374:279-434) 190 200 210 220 230 240 KIAA18 FKGLSEDTRSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIF :: :.: .: . : :. KIAA02 NDMVFCDKCNVCVHQACYGILKVPEGSWLCRSCVLGIYPQCVLC------PKKGGALKTT 250 260 270 280 290 300 250 260 270 280 290 300 KIAA18 NAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCS-QPGATI .. :: .: :. :... : : : . . . :.::. . :: : KIAA02 KTGTKWAHVSCALWIP-EVSIACPERME----PITKISHIPPSRWALVCNLCKLKTGACI 310 320 330 340 350 310 320 330 340 350 KIAA18 GCEIKACVKTYHYHCGVQDKAKYIENMSRG---IYKLYCKNHSGNDERDEEDE--ERESK : ::.:. ..: :. . .. ...: .: :: .:: : .. : : ....: KIAA02 QCSIKSCITAFHVTCAFEHGLEMKTILDEGDEVKFKSYCLKHSQNRQKLGEAEYPHHRAK 360 370 380 390 400 410 360 370 KIAA18 SRGKVEIDQQQLTQQQLNGN ..... .. .: :.: KIAA02 EQSQAKSEKTSLRAQKLRELEEEFYSLVRVEDVAAELGMPTLAVDFIYNYWKLKRKSNFN 420 430 440 450 460 470 377 residues in 1 query sequences 1987128 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:18:24 2008 done: Thu Dec 18 15:18:25 2008 Total Scan time: 0.380 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]