hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13224927/chunk_1/iprscan-20080502-13224927.nocrc
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Query sequence: KIAA1808
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00132                                                 190.5    1.6e-52   4
SM00153                                                  79.5    4.2e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00132    1/4       1    41 [.     1    52 []    18.9   0.0066
SM00132    2/4      49   101 ..     1    52 []    54.8  1.1e-11
SM00132    3/4     119   170 ..     1    52 []    69.4  4.6e-16
SM00132    4/4     178   230 ..     1    52 []    47.4  1.9e-09
SM00153    1/1     504   539 .]     1    36 []    79.5  4.2e-19

Alignments of top-scoring domains:
SM00132: domain 1 of 4, from 1 to 41: score 18.9, E = 0.0066
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg.tffekdgk
                                  evlr+ +k++H +CF+C  C++ L++++ff++ g+
    KIAA1808     1    ------------EVLRVQDKYFHIKCFVCKACGCDLAEgGFFVRQGE 35   

                   lyCkdc<-*
                     C  +   
    KIAA1808    36 YICTLD    41   

SM00132: domain 2 of 4, from 49 to 101: score 54.8, E = 1.1e-11
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg..tffekdg
                      +C+ C+++I+g ev++algk++Hp+CF+C++C+ p+ ++++  + + 
    KIAA1808    49    RCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPgdRVTFNGK 94   

                   klyCkdc<-*
                   +  C++c   
    KIAA1808    95 ECMCQKC    101  

SM00132: domain 3 of 4, from 119 to 170: score 69.4, E = 4.6e-16
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLggtffekdgkl
                       C+gCg  I   + l+al+k+wH  CFkC  C+k L+ ++++kdg +
    KIAA1808   119    SCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLLNAEYISKDGLP 165  

                   yCkdc<-*
                   yC+ +   
    KIAA1808   166 YCEAD    170  

SM00132: domain 4 of 4, from 178 to 230: score 47.4, E = 1.9e-09
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg..tffekdg
                      +C  C k Itg +vl+a++k++Hp+C  C +C++ ++++++ + ++ 
    KIAA1808   178    RCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFAEgeEMYLQGS 223  

                   klyCkdc<-*
                   ++  + c   
    KIAA1808   224 SIWHPAC    230  

SM00153: domain 1 of 1, from 504 to 539: score 79.5, E = 4.2e-19
                   *->YLsdeDFeevFgMtkeEFykLPlWKqnqLKKklgLF<-*
                      +Ls+e+F+evFgM++eEF++L+lWK+n+LKKk+ LF   
    KIAA1808   504    HLSPEEFQEVFGMSIEEFDRLALWKRNDLKKKALLF    539  

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