hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13210800/chunk_1/iprscan-20080502-13210800.nocrc
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Query sequence: KIAA1807
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00249                                                  93.7    2.2e-23   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00249    1/2      65   111 ..     1    39 []    49.9  3.3e-10
SM00249    2/2     174   229 ..     1    39 []    43.8  2.3e-08

Alignments of top-scoring domains:
SM00249: domain 1 of 2, from 65 to 111: score 49.9, E = 3.3e-10
                   *->yC.vCgk......g.llqCdkgCdrwyHv.Clgppleepdg.wyCpr
                      +C+vC+++++++++++++Cd +C+ ++H+ C+g+ +  p+g+w+C  
    KIAA1807    65    VCdVCQSpdgedgNeMVFCD-KCNICVHQaCYGILKV-PEGsWLCRT 109  

                   Ck<-*
                   C    
    KIAA1807   110 CA    111  

SM00249: domain 2 of 2, from 174 to 229: score 43.8, E = 2.3e-08
                   *->yC.vCgk..g.llqCd.kgCdrwyHv.Clgpple..........epd
                      +C++C+++ g  +qC+ k+C++++Hv+C+   +++ ++   +++e++
    KIAA1807   174    VCsLCNEkfGaSIQCSvKNCRTAFHVtCAFDRGLemktilaendEVK 220  

                   g.wyCprCk<-*
                   ++ yCp+++   
    KIAA1807   221 FkSYCPKHS    229  

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