hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13210800/chunk_1/iprscan-20080502-13210800.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1807 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00628.19.fs PHD-finger 70.1 4.2e-22 2 PF00628.19.ls PHD-finger 58.9 1.5e-14 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00628.19.fs 1/2 65 113 .. 1 51 [] 56.0 1.4e-17 PF00628.19.ls 1/2 65 113 .. 1 51 [] 57.9 3.1e-14 PF00628.19.fs 2/2 174 201 .. 1 30 [. 14.1 0.00039 Alignments of top-scoring domains: PF00628.19.fs: domain 1 of 2, from 65 to 113: score 56.0, E = 1.4e-17 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC C+vC++++ ++g+++++CD+C+ ++H+aC+g+ +pe++W+C KIAA1807 65 VCDVCQSPDGEDGNEMVFCDKCNICVHQACYGIL----KVPEgsWLC 107 peCkpk<-* + C + KIAA1807 108 RTCALG 113 PF00628.19.ls: domain 1 of 2, from 65 to 113: score 57.9, E = 3.1e-14 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC C+vC++++ ++g+++++CD+C+ ++H+aC+g+ +pe++W+C KIAA1807 65 VCDVCQSPDGEDGNEMVFCDKCNICVHQACYGIL----KVPEgsWLC 107 peCkpk<-* + C + KIAA1807 108 RTCALG 113 PF00628.19.fs: domain 2 of 2, from 174 to 201: score 14.1, E = 0.00039 *->yCsvCgkeysdaggdllqCD..gCdrwfHlaC<-* Cs C+++ g +qC ++C ++fH C KIAA1807 174 VCSLCNEK----FGASIQCSvkNCRTAFHVTC 201 //