hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13192581/chunk_1/iprscan-20080502-13192581.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1806 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 347.4 2.2e-101 10 PF00096.16.fs Zinc finger, C2H2 type 327.7 1.8e-95 10 PF01352.17.fs KRAB box 89.7 7.4e-25 1 PF01352.17.ls KRAB box 91.7 2e-24 1 PF01096.9.fs Transcription factor S-II (TFIIS) 35.2 3.4e-10 9 PF02892.5.fs BED zinc finger 28.1 1.3e-07 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 19 59 .. 1 41 [] 89.7 7.4e-25 PF01352.17.ls 1/1 19 59 .. 1 41 [] 91.7 2e-24 PF00096.16.ls 1/10 182 204 .. 1 24 [] 33.4 7.1e-07 PF00096.16.fs 1/10 182 204 .. 1 24 [] 31.5 1.4e-06 PF00096.16.fs 2/10 210 232 .. 1 24 [] 35.5 1.4e-07 PF00096.16.ls 2/10 210 232 .. 1 24 [] 37.4 4.5e-08 PF00096.16.fs 3/10 238 260 .. 1 24 [] 33.0 5.8e-07 PF00096.16.ls 3/10 238 260 .. 1 24 [] 34.9 2.6e-07 PF00096.16.ls 4/10 266 288 .. 1 24 [] 39.5 1.1e-08 PF00096.16.fs 4/10 266 288 .. 1 24 [] 37.6 4.1e-08 PF00096.16.fs 5/10 294 316 .. 1 24 [] 32.0 9.8e-07 PF00096.16.ls 5/10 294 316 .. 1 24 [] 34.0 4.8e-07 PF00096.16.fs 6/10 322 344 .. 1 24 [] 31.5 1.3e-06 PF00096.16.ls 6/10 322 344 .. 1 24 [] 33.5 7e-07 PF00096.16.fs 7/10 350 372 .. 1 24 [] 30.2 2.8e-06 PF00096.16.ls 7/10 350 372 .. 1 24 [] 32.2 1.7e-06 PF00096.16.fs 8/10 378 400 .. 1 24 [] 33.9 3.3e-07 PF00096.16.ls 8/10 378 400 .. 1 24 [] 35.9 1.3e-07 PF00096.16.fs 9/10 406 428 .. 1 24 [] 31.4 1.4e-06 PF00096.16.ls 9/10 406 428 .. 1 24 [] 33.4 7.3e-07 PF00096.16.fs 10/10 434 456 .. 1 24 [] 31.2 1.6e-06 PF00096.16.ls 10/10 434 456 .. 1 24 [] 33.2 8.7e-07 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 19 to 59: score 89.7, E = 7.4e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF DVaV Ft EEW Ld++Qr+LYrdVMlENy+nL+S+ KIAA1806 19 VTFADVAVVFTPEEWVFLDSTQRSLYRDVMLENYRNLASVA 59 PF01352.17.ls: domain 1 of 1, from 19 to 59: score 91.7, E = 2e-24 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF DVaV Ft EEW Ld++Qr+LYrdVMlENy+nL+S+ KIAA1806 19 VTFADVAVVFTPEEWVFLDSTQRSLYRDVMLENYRNLASVA 59 PF00096.16.ls: domain 1 of 10, from 182 to 204: score 33.4, E = 7.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C ksF+ +s+L rH +tH KIAA1806 182 YACN-KCEKSFRYSSDLIRHEKTH 204 PF00096.16.fs: domain 1 of 10, from 182 to 204: score 31.5, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C ksF+ +s+L rH +tH KIAA1806 182 YACN-KCEKSFRYSSDLIRHEKTH 204 PF00096.16.fs: domain 2 of 10, from 210 to 232: score 35.5, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cg++F+ +snL+rH+rtH KIAA1806 210 FDCQ-ECGQAFKYSSNLRRHMRTH 232 PF00096.16.ls: domain 2 of 10, from 210 to 232: score 37.4, E = 4.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cg++F+ +snL+rH+rtH KIAA1806 210 FDCQ-ECGQAFKYSSNLRRHMRTH 232 PF00096.16.fs: domain 3 of 10, from 238 to 260: score 33.0, E = 5.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+r+ nL H+r H KIAA1806 238 FECS-QCGKTFTRNFNLILHQRNH 260 PF00096.16.ls: domain 3 of 10, from 238 to 260: score 34.9, E = 2.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+r+ nL H+r H KIAA1806 238 FECS-QCGKTFTRNFNLILHQRNH 260 PF00096.16.ls: domain 4 of 10, from 266 to 288: score 39.5, E = 1.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F+++s+L++H rtH KIAA1806 266 YECK-DCGKAFNQPSSLRSHVRTH 288 PF00096.16.fs: domain 4 of 10, from 266 to 288: score 37.6, E = 4.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F+++s+L++H rtH KIAA1806 266 YECK-DCGKAFNQPSSLRSHVRTH 288 PF00096.16.fs: domain 5 of 10, from 294 to 316: score 32.0, E = 9.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+ +s+Lk+HlrtH KIAA1806 294 FECS-QCGKAFREHSSLKTHLRTH 316 PF00096.16.ls: domain 5 of 10, from 294 to 316: score 34.0, E = 4.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+ +s+Lk+HlrtH KIAA1806 294 FECS-QCGKAFREHSSLKTHLRTH 316 PF00096.16.fs: domain 6 of 10, from 322 to 344: score 31.5, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+++ +L+ H+r+H KIAA1806 322 YECN-QCGKPFRTSTHLNVHKRIH 344 PF00096.16.ls: domain 6 of 10, from 322 to 344: score 33.5, E = 7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+++ +L+ H+r+H KIAA1806 322 YECN-QCGKPFRTSTHLNVHKRIH 344 PF00096.16.fs: domain 7 of 10, from 350 to 372: score 30.2, E = 2.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C Cg++ sr s+Lk+H+rtH KIAA1806 350 YECA-TCGQVLSRLSTLKSHMRTH 372 PF00096.16.ls: domain 7 of 10, from 350 to 372: score 32.2, E = 1.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C Cg++ sr s+Lk+H+rtH KIAA1806 350 YECA-TCGQVLSRLSTLKSHMRTH 372 PF00096.16.fs: domain 8 of 10, from 378 to 400: score 33.9, E = 3.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++Fs +s+L++H rtH KIAA1806 378 YVCQ-ECGRAFSEPSSLRKHARTH 400 PF00096.16.ls: domain 8 of 10, from 378 to 400: score 35.9, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++Fs +s+L++H rtH KIAA1806 378 YVCQ-ECGRAFSEPSSLRKHARTH 400 PF00096.16.fs: domain 9 of 10, from 406 to 428: score 31.4, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg++F ++s+L H rtH KIAA1806 406 YACQ-ECGRAFGQSSHLIVHVRTH 428 PF00096.16.ls: domain 9 of 10, from 406 to 428: score 33.4, E = 7.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg++F ++s+L H rtH KIAA1806 406 YACQ-ECGRAFGQSSHLIVHVRTH 428 PF00096.16.fs: domain 10 of 10, from 434 to 456: score 31.2, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+F+++s+L+ H+rtH KIAA1806 434 YQCN-QCEKAFRHSSSLTVHKRTH 456 PF00096.16.ls: domain 10 of 10, from 434 to 456: score 33.2, E = 8.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+F+++s+L+ H+rtH KIAA1806 434 YQCN-QCEKAFRHSSSLTVHKRTH 456 //