hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13055924/chunk_1/iprscan-20080502-13055924.nocrc
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Query sequence: KIAA1798
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00561                                                 512.6   1.7e-149   3
SM00454                                                  59.6    4.1e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00561    1/3     233   333 ..     1   121 []   176.8  2.1e-48
SM00561    2/3     341   440 ..     1   121 []   163.1  2.9e-44
SM00561    3/3     449   544 ..     1   121 []   172.7  3.6e-47
SM00454    1/1     706   773 ..     1    67 []    59.6  4.1e-13

Alignments of top-scoring domains:
SM00561: domain 1 of 3, from 233 to 333: score 176.8, E = 2.1e-48
                   *->fdWeeyLikeetgaraaPvelF.dkqpvdsppngFkvGMKLEavDpD
                      ++W +yL  ee++a+a+P  lF+ +q+ +  +ngFkvGMKLE vDp 
    KIAA1798   233    WCWASYL--EEEKAVAVPAKLFkEHQSFPYNKNGFKVGMKLEGVDP- 276  

                   yDcrnpslicvATVveVkGrgrlllhfddDyPELPvdGwdderVhesydf
                       + s +cv TV eV+G+ r++lhfd         G++d+     ydf
    KIAA1798   277 ---EHQSVYCVLTVAEVCGY-RIKLHFD---------GYSDC-----YDF 308  

                   WcdadSpdIfPvGWCeknghpLqpP<-*
                   W++ad  dI+PvGWCek+gh+L pP   
    KIAA1798   309 WVNADALDIHPVGWCEKTGHKLHPP    333  

SM00561: domain 2 of 3, from 341 to 440: score 163.1, E = 2.9e-44
                   *->fdWeeyLikeetgaraaPvelFdkqpvdsppngFkvGMKLEavDpDy
                      f+W+ yL  + ++a+aaP+ lF +q+ +  p+gF+vGMKLEavD+  
    KIAA1798   341    FNWQTYL--KTCKAQAAPKSLFENQNITVIPSGFRVGMKLEAVDK-- 383  

                   DcrnpslicvATVveVkGrgrlllhfddDyPELPvdGwdderVhesydfW
                     +nps icvATV++ ++  r+l+hfd          wd+      yd+W
    KIAA1798   384 --KNPSFICVATVTDMVDN-RFLVHFD---------NWDES-----YDYW 416  

                   cdadSpdIfPvGWCeknghpLqpP<-*
                   c a+Sp I+PvGWC ++   L +P   
    KIAA1798   417 CEASSPHIHPVGWCKEHRRTLITP    440  

SM00561: domain 3 of 3, from 449 to 544: score 172.7, E = 3.6e-47
                   *->fdWeeyLikeetgaraaPvelFdkqpvdsppngFkvGMKLEavDpDy
                      f+W++yL  eet++ +aP ++F     + pp+gF+  MKLE+vD+  
    KIAA1798   449    FSWDKYL--EETNSLPAPARAF----KVKPPHGFQKKMKLEVVDK-- 487  

                   DcrnpslicvATVveVkGrgrlllhfddDyPELPvdGwdderVhesydfW
                     rnp  i+vATV ++ ++ r+++hfd         Gw  +     yd+W
    KIAA1798   488 --RNPMFIRVATVADTDDH-RVKVHFD---------GWNNC-----YDYW 520  

                   cdadSpdIfPvGWCeknghpLqpP<-*
                   +dadSpdI+PvGWC k+ghpLqpP   
    KIAA1798   521 IDADSPDIHPVGWCSKTGHPLQPP    544  

SM00454: domain 1 of 1, from 706 to 773: score 59.6, E = 4.1e-13
                   *->vs.wspesVaeWLesigleq.YadnFrkngidgeelllltseedLke
                      vs+ws ++V+e+++s+  ++++ + F++++idge++ll+t + d+ +
    KIAA1798   706    VSkWSTDEVSEFIQSLPGCEeHGKVFKDEQIDGEAFLLMT-QTDIVK 751  

                   lGitllGhRkkIlsaiqklkeq<-*
                   ++  +lG+ +kI+++i  +k+    
    KIAA1798   752 IMSIKLGPALKIFNSILMFKAA    773  

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