hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13055924/chunk_1/iprscan-20080502-13055924.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1798 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02820.9.ls mbt repeat 420.1 2.8e-123 3 PF02820.9.fs mbt repeat 414.4 1.5e-121 3 PF00536.20.fs SAM domain (Sterile alpha motif) 57.9 2e-16 1 PF00536.20.ls SAM domain (Sterile alpha motif) 59.9 7.7e-15 1 PF07647.7.fs SAM domain (Sterile alpha motif) 26.4 4.5e-07 1 PF07647.7.ls SAM domain (Sterile alpha motif) 28.3 2.5e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02820.9.fs 1/3 269 342 .. 1 77 [] 150.0 6e-42 PF02820.9.ls 1/3 269 342 .. 1 77 [] 151.9 1.5e-42 PF02820.9.ls 2/3 376 449 .. 1 77 [] 131.7 1.9e-36 PF02820.9.fs 2/3 376 449 .. 1 77 [] 129.7 7.4e-36 PF02820.9.ls 3/3 480 546 .. 1 77 [] 136.5 6.5e-38 PF02820.9.fs 3/3 480 546 .. 1 77 [] 134.7 2.3e-37 PF07647.7.fs 1/1 706 773 .. 1 72 [] 26.4 4.5e-07 PF07647.7.ls 1/1 706 773 .. 1 72 [] 28.3 2.5e-05 PF00536.20.fs 1/1 707 771 .. 1 65 [] 57.9 2e-16 PF00536.20.ls 1/1 707 771 .. 1 65 [] 59.9 7.7e-15 Alignments of top-scoring domains: PF02820.9.fs: domain 1 of 3, from 269 to 342: score 150.0, E = 6e-42 *->MKLEAvDprnpsliCvATVveVrGsrYLrLrfDGwdseyraDfWchv MKLE vDp++ s +Cv TV+eV+G+r ++L+fDG++++y DfW+++ KIAA1798 269 MKLEGVDPEHQSVYCVLTVAEVCGYR-IKLHFDGYSDCY--DFWVNA 312 dSpdIfPvGWCeknghkLqPPpGyrskkfs<-* d dI+PvGWCek+ghkL PP+Gy++++f KIAA1798 313 DALDIHPVGWCEKTGHKLHPPKGYKEEEFN 342 PF02820.9.ls: domain 1 of 3, from 269 to 342: score 151.9, E = 1.5e-42 *->MKLEAvDprnpsliCvATVveVrGsrYLrLrfDGwdseyraDfWchv MKLE vDp++ s +Cv TV+eV+G+r ++L+fDG++++y DfW+++ KIAA1798 269 MKLEGVDPEHQSVYCVLTVAEVCGYR-IKLHFDGYSDCY--DFWVNA 312 dSpdIfPvGWCeknghkLqPPpGyrskkfs<-* d dI+PvGWCek+ghkL PP+Gy++++f KIAA1798 313 DALDIHPVGWCEKTGHKLHPPKGYKEEEFN 342 PF02820.9.ls: domain 2 of 3, from 376 to 449: score 131.7, E = 1.9e-36 *->MKLEAvDprnpsliCvATVveVrGsrYLrLrfDGwdseyraDfWchv MKLEAvD++nps+iCvATV+++++ r ++++fD wd+ y D+Wc++ KIAA1798 376 MKLEAVDKKNPSFICVATVTDMVDNR-FLVHFDNWDESY--DYWCEA 419 dSpdIfPvGWCeknghkLqPPpGyrskkfs<-* Sp I+PvGWC ++ ++L +PpGy+ k + KIAA1798 420 SSPHIHPVGWCKEHRRTLITPPGYPNVKHF 449 PF02820.9.fs: domain 2 of 3, from 376 to 449: score 129.7, E = 7.4e-36 *->MKLEAvDprnpsliCvATVveVrGsrYLrLrfDGwdseyraDfWchv MKLEAvD++nps+iCvATV+++++ r ++++fD wd+ y D+Wc++ KIAA1798 376 MKLEAVDKKNPSFICVATVTDMVDNR-FLVHFDNWDESY--DYWCEA 419 dSpdIfPvGWCeknghkLqPPpGyrskkfs<-* Sp I+PvGWC ++ ++L +PpGy+ k + KIAA1798 420 SSPHIHPVGWCKEHRRTLITPPGYPNVKHF 449 PF02820.9.ls: domain 3 of 3, from 480 to 546: score 136.5, E = 6.5e-38 *->MKLEAvDprnpsliCvATVveVrGsrYLrLrfDGwdseyraDfWchv MKLE+vD+rnp +i+vATV+++ + r ++++fDGw ++y D+W ++ KIAA1798 480 MKLEVVDKRNPMFIRVATVADTDDHR-VKVHFDGWNNCY--DYWIDA 523 dSpdIfPvGWCeknghkLqPPpGyrskkfs<-* dSpdI+PvGWC+k+gh+LqPP +s KIAA1798 524 DSPDIHPVGWCSKTGHPLQPP-------LS 546 PF02820.9.fs: domain 3 of 3, from 480 to 546: score 134.7, E = 2.3e-37 *->MKLEAvDprnpsliCvATVveVrGsrYLrLrfDGwdseyraDfWchv MKLE+vD+rnp +i+vATV+++ + r ++++fDGw ++y D+W ++ KIAA1798 480 MKLEVVDKRNPMFIRVATVADTDDHR-VKVHFDGWNNCY--DYWIDA 523 dSpdIfPvGWCeknghkLqPPpGyrskkfs<-* dSpdI+PvGWC+k+gh+LqPP +s KIAA1798 524 DSPDIHPVGWCSKTGHPLQPP-------LS 546 PF07647.7.fs: domain 1 of 1, from 706 to 773: score 26.4, E = 4.5e-07 *->veswslesvaeWLesi.glegqYkdnFsdqgitglellllrlteedL v+ ws+++v+e+ +s++g+ +++ F+d +i+g e+ l +t+ d KIAA1798 706 VSKWSTDEVSEFIQSLpGC-EEHGKVFKDEQIDG-EAF-LLMTQTDI 749 aklalGitsvghRkkilkkiqelkqq<-* ++ ++g+ +ki ++i +k KIAA1798 750 -V-KIMSIKLGPALKIFNSILMFKAA 773 PF07647.7.ls: domain 1 of 1, from 706 to 773: score 28.3, E = 2.5e-05 *->veswslesvaeWLesi.glegqYkdnFsdqgitglellllrlteedL v+ ws+++v+e+ +s++g+ +++ F+d +i+g e+ l +t+ d KIAA1798 706 VSKWSTDEVSEFIQSLpGC-EEHGKVFKDEQIDG-EAF-LLMTQTDI 749 aklalGitsvghRkkilkkiqelkqq<-* ++ ++g+ +ki ++i +k KIAA1798 750 -V-KIMSIKLGPALKIFNSILMFKAA 773 PF00536.20.fs: domain 1 of 1, from 707 to 771: score 57.9, E = 2e-16 *->dgwsfesVgeWLesi.glgqYidnFlsagyidgdtllqlteeDLedl + ws ++V+e+++s++g++++ + F + + idg+++l++t+ D++++ KIAA1798 707 SKWSTDEVSEFIQSLpGCEEHGKVF-KDEQIDGEAFLLMTQTDIVKI 752 GvtllGHrkKIlssIqgLk<-* ++lG+++KI +sI ++k KIAA1798 753 MSIKLGPALKIFNSILMFK 771 PF00536.20.ls: domain 1 of 1, from 707 to 771: score 59.9, E = 7.7e-15 *->dgwsfesVgeWLesi.glgqYidnFlsagyidgdtllqlteeDLedl + ws ++V+e+++s++g++++ + F + + idg+++l++t+ D++++ KIAA1798 707 SKWSTDEVSEFIQSLpGCEEHGKVF-KDEQIDGEAFLLMTQTDIVKI 752 GvtllGHrkKIlssIqgLk<-* ++lG+++KI +sI ++k KIAA1798 753 MSIKLGPALKIFNSILMFK 771 //