# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj18826.fasta.huge -Q ../query/KIAA1796.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1796, 245 aa
 vs ./tmplib.25089 library

1987260 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 3.5400+/-0.00417; mu= 18.6900+/- 0.286
 mean_var=64.5951+/-15.096, 0's: 0 Z-trim: 1  B-trim: 7 in 1/39
 Lambda= 0.159579

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0273  ( 356 res)   ha06723                     ( 356) 1296 306.5 9.5e-85


>>KIAA0273  ( 356 res)   ha06723                          (356 aa)
 initn: 1296 init1: 1296 opt: 1296  Z-score: 1613.4  bits: 306.5 E(): 9.5e-85
Smith-Waterman score: 1296;  75.102% identity (91.020% similar) in 245 aa overlap (1-245:112-356)

                                             10        20        30
KIAA17                               VAVQTASKQVDGDYVVSEWSEIIEFCTADY
                                     :::::: :: ::.:.:: ::: .::::.::
KIAA02 DVPTKLVAKAVPLPMTVRGHWFLSPRTEYSVAVQTAVKQSDGEYLVSGWSETVEFCTGDY
              90       100       110       120       130       140 

               40        50        60        70        80        90
KIAA17 SKVHLTQLLEKAEVIAGRMLKFSVFYRNQHKEYFDYVREHHGNAMQPSVKDNSGSHGSPI
       .: ::.:: :::: ::::::.:::::::.:::::...: : :: .:: .:::::::::: 
KIAA02 AKEHLAQLQEKAEQIAGRMLRFSVFYRNHHKEYFQHARTHCGNMLQPYLKDNSGSHGSPT
             150       160       170       180       190       200 

              100       110       120       130       140       150
KIAA17 SGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAAEKLFNPNTNLYFGDFYCMYTAYHYV
       :: :.:.::::.::::::.:::::::::.::.: :..::::.:::::.:::::::::::.
KIAA02 SGMLHGVFFSCNTEFNTGQPPQDSPYGRWRFQIPAQRLFNPSTNLYFADFYCMYTAYHYA
             210       220       230       240       250       260 

              160       170       180       190       200       210
KIAA17 ILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEEDGVLVYHHAQDVILEVIYTDPVDLS
       :::.:: :: ::.::..::: :.   ::::::. ::: ::..::::.:::.:::.:::::
KIAA02 ILVLAPKGSLGDRFCRDRLPLLDIACNKFLTCSVEDGELVFRHAQDLILEIIYTEPVDLS
             270       280       290       300       310       320 

              220       230       240     
KIAA17 LGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR
       :::..::.::::::::::.::::::::::::::::
KIAA02 LGTLGEISGHQLMSLSTADAKKDPSCKTCNISVGR
             330       340       350      




245 residues in 1 query   sequences
1987260 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:17:22 2008 done: Thu Dec 18 15:17:22 2008
 Total Scan time:  0.300 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]