hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12403272/chunk_1/iprscan-20080502-12403272.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1783
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00242                                                -387.9    9.9e-10   1
SM00326                                                  42.3    6.3e-08   1
SM00139                                                  22.0    1.5e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00242    1/1      51   366 ..     1   771 []  -387.9  9.9e-10
SM00139    1/1     522   673 ..     1   166 []    22.0  1.5e-06
SM00326    1/1    1455  1512 ..     1    58 []    42.3  6.3e-08

Alignments of top-scoring domains:
SM00242: domain 1 of 1, from 51 to 366: score -387.9, E = 9.9e-10
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                      + p +                                          
    KIAA1783    51    MPPGPA----------------------------------------- 56   

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                          +     ++++ r                      +A +++l+ 
    KIAA1783    57 -------GEWPGATVQQPR---------------------QRAPTALLQP 78   

                   keNQsIiISGESGAGKTEatKkimqYLAavsg.svesvedqiLesNPiLE
                                                 +g+++++v            
    KIAA1783    79 D----------------------------AAGpGGGGVSA---------- 90   

                   AFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQak
                                             +  + GA                 
    KIAA1783    91 --------------------------GVAVLGAC---------------- 98   

                   gERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggt.pfan.k
                                    +  +e  L +    p        ++ +p+ +++
    KIAA1783    99 -----------------PSASEGVLPR---PPG------RSAPqPPEYpG 122  

                   .ryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAI
                   ++               + +                              
    KIAA1783   123 rP---------------DMAV----------------------------- 128  

                   LHLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLt
                              ++                                 ++  
    KIAA1783   129 -----------PG---------------------------------WSAM 134  

                   kRkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINksl
                    R+                                               
    KIAA1783   135 VRSR---------------------------------------------- 138  

                   sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvFKlEQEEYe
                                                                     
    KIAA1783     - -------------------------------------------------- -    

                   rEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeClfHAqPkgT
                              +                           ++ +    ++T
    KIAA1783   139 ----------LT---------------------------ATST---SQAT 148  

                   DqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrtaFiikHYA
                   D+tFl+K      h hh++hp + kp           r + + F+++HYA
    KIAA1783   149 DHTFLQKS-----HYHHGDHPSYAKP-----------RLPLPVFTVRHYA 182  

                   GdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFpeeadqsssaak
                   G+VtY+v+ FL +N+D+L + ++e l +S+  l+ sLF+e ++qs     
    KIAA1783   183 GTVTYQVHKFLNRNRDQLDPAVVEMLGQSQLQLVGSLFQEAEPQSRG--- 229  

                   ekssggagksrkagrrepskgtisskkrppTvGsqFk.sLneLmetLnst
                                            ++  pT++s+F++ L++L++ L  +
    KIAA1783   230 -------------------------GRGRPTLASRFQqALEDLIARLGRS 254  

                   nPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRraGFPyRlpf
                   +++FI C  PN  K+pg Fd   V  QL+   +LE++  R a FP+R pf
    KIAA1783   255 HVYFIQCLTPNPGKLPGLFDVGHVTEQLHQAAILEAVGTRSANFPVRVPF 304  

                   deFlqRYkvLlpktwppwggewknrlfgdakkacealLqslglgiegdnl
                   + Fl  ++ L +   +            ++++ c a+L ++ +       
    KIAA1783   305 EAFLASFQALGSEGQEDL----------SDREKCGAVLSQVLG------A 338  

                   deeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                   ++  y +G TKv l  +  +++LEelR++   
    KIAA1783   339 ESPLYHLGATKVLLQ-EQGWQRLEELRDQ    366  

SM00139: domain 1 of 1, from 522 to 673: score 22.0, E = 1.5e-06
                   *->fskkPiktsLLkleddkeedskeAvkiFkaILkfMGDlPlpkssssk
                       +  P+ ++L++l++d     ++A++i k  L+  GD  l+      
    KIAA1783   522    RPGQPLAKPLTQLDGD---NPQRALDINKVMLRLLGDGSLES----- 560  

                   lytLGeaqeFnmlepspdshlelvqfIlqkglarpeLRDEiYCQliKQlt
                                    +++   + +++ +g   p LR+E++ Ql+ Ql+
    KIAA1783   561 -----------------WQRQIMGAYLVRQGQCWPGLRNELFSQLVAQLW 593  

                   ........kRGWeLLylctglFpPSeSrllkyLlqFLkrradqptetpql
                   ++++++++ RGW L++ +++ FpP    l+k Ll+F ++ a+      ++
    KIAA1783   594 qnpdeqqsQRGWALMAVLLSAFPPLP-VLQKPLLKFVSDQAPR-----GM 637  

                   maqgla.........kycleGaRkqpPsrlEleAik<-*
                   +a+++++  +  ++++  +  +R  pP++lE+ A     
    KIAA1783   638 AALCQHkllgaleqsQLASGATRAHPPTQLEWLAGW    673  

SM00326: domain 1 of 1, from 1455 to 1512: score 42.3, E = 6.3e-08
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks..ddgWweGelnrtGk
                      +yv+Al +y  +n   LsF++GD i +l   + ++gW  G  +  G+
    KIAA1783  1455    GYVIALRSYITDNCSLLSFHRGDLIKLLPVAtlEPGWQFGSAG--GR 1499 

                   eGlfPsnYVeeie<-*
                    GlfP+  V++     
    KIAA1783  1500 SGLFPADIVQPAA    1512 

//