# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg01285.fasta.huge -Q ../query/KIAA1783.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1783, 1560 aa
 vs ./tmplib.25089 library

1985945 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 14.7487+/-0.0115; mu= -30.3795+/- 0.775
 mean_var=613.9455+/-149.728, 0's: 0 Z-trim: 5  B-trim: 0 in 0/40
 Lambda= 0.051762

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 41, opt: 29, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0799  ( 2111 res)   fg01615y1                  (2111)  497 53.4 5.5e-07


>>KIAA0799  ( 2111 res)   fg01615y1                       (2111 aa)
 initn: 488 init1: 228 opt: 497  Z-score: 217.3  bits: 53.4 E(): 5.5e-07
Smith-Waterman score: 497;  33.096% identity (67.616% similar) in 281 aa overlap (146-412:567-846)

         120       130       140       150       160       170     
KIAA17 QPPEYPGRPDMAVPGWSAMVRSRLTATSTSQATDHTFLQKSHYHHGDHPSYAKPRLPLPV
                                     :::: :.:.: : .:...  :.:::. .  
KIAA07 IDWIDNGECLDLIEKKLGLLALINEESHFPQATDSTLLEKLHSQHANNHFYVKPRVAVNN
        540       550       560       570       580       590      

         180       190       200       210       220               
KIAA17 FTVRHYAGTVTYQVHKFLNRNRDQLDPAVVEMLGQSQLQLVGSLFQEAEPQSR------G
       : :.:::: : :.:. .:..::: .   ....: .:..... .::...  ..       :
KIAA07 FGVKHYAGEVQYDVRGILEKNRDTFRDDLLNLLRESRFDFIYDLFEHVSSRNNQDTLKCG
        600       610       620       630       640       650      

     230        240       250       260       270       280        
KIAA17 GRGR-PTLASRFQQALEDLIARLGRSHVYFIQCLTPNPGKLPGLFDVGHVTEQLHQAAIL
       .. : ::..:.:...:..:.: :. :. .:..:. ::  :.:  :: . : .::. ...:
KIAA07 SKHRRPTVSSQFKDSLHSLMATLSSSNPFFVRCIKPNMQKMPDQFDQAVVLNQLRYSGML
        660       670       680       690       700       710      

      290       300       310       320       330       340        
KIAA17 EAVGTRSANFPVRVPFEAFLASFQALGSEGQEDLSDREKCGAVLSQVLGAESPLYHLGAT
       :.:  :.:.. :: ::. :   ...:  .     . : :: ..: :.  : .  ..:: :
KIAA07 ETVRIRKAGYAVRRPFQDFYKRYKVLMRNLALPEDVRGKCTSLL-QLYDASNSEWQLGKT
        720       730       740       750       760        770     

      350       360       370       380          390          400  
KIAA17 KVLLQEQGWQRLEELRDQQRSQALVDLHRSFHTCISRQ---RVLPR---MQARMRGFQAR
       ::.:.:.  :.::. :... :.: . ..      ..:.   .::     .:  .:.:  :
KIAA07 KVFLRESLEQKLEKRREEEVSHAAMVIRAHVLGFLARKQYRKVLYCVVIIQKNYRAFLLR
         780       790       800       810       820       830     

             410       420       430       440       450       460 
KIAA17 KRYLR-RRAALGQLNTILLVAQPLLQRRQRLQLGRWQGWHSSERALERVPSMELGRLEIP
       .:.:. ..::.                                                 
KIAA07 RRFLHLKKAAIVFQKQLRGQIARRVYRQLLAEKREQEEKKKQEEEEKKKREEEERERERE
         840       850       860       870       880       890     




1560 residues in 1 query   sequences
1985945 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:16:52 2008 done: Thu Dec 18 15:16:53 2008
 Total Scan time:  0.900 Total Display time:  0.060

Function used was FASTA [version 34.26.5 April 26, 2007]