hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12385505/chunk_1/iprscan-20080502-12385505.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1782 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 126.6 6.3e-35 6 PF00096.16.fs Zinc finger, C2H2 type 114.8 2.2e-31 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 2/6 147 169 .. 1 24 [] 30.1 3e-06 PF00096.16.ls 2/6 147 169 .. 1 24 [] 32.1 1.9e-06 PF00096.16.fs 3/6 175 197 .. 1 24 [] 26.5 2.3e-05 PF00096.16.ls 3/6 175 197 .. 1 24 [] 28.5 2.2e-05 PF00096.16.fs 4/6 208 231 .. 1 24 [] 26.0 3.1e-05 PF00096.16.ls 4/6 208 231 .. 1 24 [] 28.0 3.1e-05 Alignments of top-scoring domains: PF00096.16.fs: domain 2 of 6, from 147 to 169: score 30.1, E = 3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cg sF++k+nL rH++ H KIAA1782 147 FHCN-QCGASFTQKGNLLRHIKLH 169 PF00096.16.ls: domain 2 of 6, from 147 to 169: score 32.1, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cg sF++k+nL rH++ H KIAA1782 147 FHCN-QCGASFTQKGNLLRHIKLH 169 PF00096.16.fs: domain 3 of 6, from 175 to 197: score 26.5, E = 2.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp C+++++r++ L+ HlrtH KIAA1782 175 FKCP-FCNYACRRRDALTGHLRTH 197 PF00096.16.ls: domain 3 of 6, from 175 to 197: score 28.5, E = 2.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp C+++++r++ L+ HlrtH KIAA1782 175 FKCP-FCNYACRRRDALTGHLRTH 197 PF00096.16.fs: domain 4 of 6, from 208 to 231: score 26.0, E = 3.1e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ykC+ +Cg+s++++s+L+ H+ + H KIAA1782 208 YKCN-YCGRSYKQQSTLEEHKERcH 231 PF00096.16.ls: domain 4 of 6, from 208 to 231: score 28.0, E = 3.1e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ykC+ +Cg+s++++s+L+ H+ + H KIAA1782 208 YKCN-YCGRSYKQQSTLEEHKERcH 231 //