hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12371140/chunk_1/iprscan-20080502-12371140.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1781 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00181 309.6 2.2e-88 17 SM00180 265.2 5.1e-75 16 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00181 1/17 32 60 .. 1 32 [] 15.7 6.7 SM00181 2/17 71 103 .. 1 32 [] 24.5 0.015 SM00180 1/16 76 115 .. 1 42 [] 22.4 0.065 SM00181 3/17 114 146 .. 1 32 [] 18.7 0.82 SM00180 2/16 119 158 .. 1 42 [] 23.8 0.024 SM00181 4/17 157 189 .. 1 32 [] 28.8 0.00072 SM00180 3/16 162 201 .. 1 42 [] 2.3 5.6 SM00181 5/17 200 232 .. 1 32 [] 23.6 0.028 SM00180 4/16 205 244 .. 1 42 [] 24.7 0.012 SM00181 6/17 243 275 .. 1 32 [] 21.7 0.1 SM00180 5/16 248 288 .. 1 42 [] 25.0 0.01 SM00181 7/17 287 321 .. 1 32 [] 5.2 88 SM00180 6/16 292 333 .. 1 42 [] 27.4 0.002 SM00181 8/17 332 364 .. 1 32 [] 17.1 2.5 SM00180 7/16 337 376 .. 1 42 [] 10.9 1.1 SM00181 9/17 375 407 .. 1 32 [] 19.8 0.38 SM00180 8/16 380 419 .. 1 42 [] 12.8 0.78 SM00181 10/17 418 450 .. 1 32 [] 19.3 0.55 SM00180 9/16 423 462 .. 1 42 [] 4.5 3.7 SM00181 11/17 461 493 .. 1 32 [] 6.2 73 SM00180 10/16 466 505 .. 1 42 [] 20.3 0.19 SM00181 12/17 504 536 .. 1 32 [] 20.6 0.22 SM00180 11/16 509 548 .. 1 42 [] 22.3 0.066 SM00181 13/17 547 581 .. 1 32 [] 15.1 10 SM00180 12/16 551 593 .. 1 42 [] 3.7 4.3 SM00181 14/17 592 624 .. 1 32 [] 21.4 0.12 SM00180 13/16 597 636 .. 1 42 [] 19.2 0.24 SM00181 15/17 635 667 .. 1 32 [] 15.0 11 SM00180 14/16 640 679 .. 1 42 [] 14.0 0.63 SM00181 16/17 678 710 .. 1 32 [] 21.5 0.12 SM00180 15/16 683 722 .. 1 42 [] 30.1 0.0003 SM00181 17/17 721 753 .. 1 32 [] 15.4 7.9 SM00180 16/16 726 755 .. 1 42 [] 1.7 6.2 Alignments of top-scoring domains: SM00181: domain 1 of 17, from 32 to 60: score 15.7, E = 6.7 *->eCa.pCsnGgtEqnGtCi.sytC.CpgpGytg.rCe<-* C + C +G +C++ tC+C pG+ g+ C KIAA1781 32 LCTeECVHG------RCVsPDTChCE-PGWGGpDCS 60 SM00181: domain 2 of 17, from 71 to 103: score 24.5, E = 0.015 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+++ C+nG + C + + C C+ +G++g rCe KIAA1781 71 HCSnrcQCQNG-----ALCNpiTGACvCA-AGFRGwRCE 103 SM00180: domain 1 of 16, from 76 to 115: score 22.4, E = 0.065 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy..g C+C ++ C+p tG C+ C + G rC+ e CapG +++g KIAA1781 76 CQCQ-----NgalCNPiTGACV-CAAGFRG-WRCE-ELCAPGTHgkG 114 C<-* C KIAA1781 115 C 115 SM00181: domain 3 of 17, from 114 to 146: score 18.7, E = 0.82 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+ + C +G + C ++ +C C+ pGytg +Ce KIAA1781 114 GCQlpcQCRHG-----ASCDprAGEClCA-PGYTGvYCE 146 SM00180: domain 2 of 16, from 119 to 158: score 23.8, E = 0.024 *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC C+C +G +Cdp+ G Cl C p++tG C+ e C pG ++ +C KIAA1781 119 CQC----RHGasCDPrAGECL-CAPGYTG-VYCE-ELCPPGSHgaHC 158 <-* KIAA1781 - - SM00181: domain 4 of 17, from 157 to 189: score 28.8, E = 0.00072 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+ + pC+nG GtC++ + +C Cp pG+tg C KIAA1781 157 HCElrcPCQNG-----GTCHhiTGECaCP-PGWTGaVCA 189 SM00180: domain 3 of 16, from 162 to 201: score 2.3, E = 5.6 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C+C +G+C+ tG C C p+ tG C + C pG ++++C KIAA1781 162 CPCQ---NGGtCHHiTGECA-CPPGWTG-AVCAQP-CPPGTFgqNC 201 -* KIAA1781 - - SM00181: domain 5 of 17, from 200 to 232: score 23.6, E = 0.028 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+++ pC++G G+C + + +C+C +Gy+g+rC+ KIAA1781 200 NCSqdcPCHHG-----GQCDhvTGQChCT-AGYMGdRCQ 232 SM00180: domain 4 of 16, from 205 to 244: score 24.7, E = 0.012 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C+C+ +G+Cd tGqC+ C +++G +rC +e C G ++ C KIAA1781 205 CPCH---HGGqCDHvTGQCH-CTAGYMG-DRCQEE-CPFGSFgfQC 244 -* KIAA1781 - - SM00181: domain 6 of 17, from 243 to 275: score 21.7, E = 0.1 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+++ +C+nG G+C +++ C+C pGy+g+rC+ KIAA1781 243 QCSqrcDCHNG-----GQCSptTGACeCE-PGYKGpRCQ 275 SM00180: domain 5 of 16, from 248 to 288: score 25.0, E = 0.01 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdde.rCapGyy..gC CdC+ +G+C p+tG C+ C p++ G +rC e+ C +G +++gC KIAA1781 248 CDCH---NGGqCSPtTGACE-CEPGYKG-PRCQ-ErLCPEGLHgpGC 288 <-* KIAA1781 - - SM00181: domain 7 of 17, from 287 to 321: score 5.2, E = 88 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C + pC+ + t C++ + C+C+ pG++g++C KIAA1781 287 GCTlpcPCDADNTI---SCHpvTGACtCQ-PGWSGhHCN 321 SM00180: domain 6 of 16, from 292 to 333: score 27.4, E = 0.002 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy..g C+C+ ++++ +C+p tG C C+p+ G +C++ C Gyy++g KIAA1781 292 CPCD---ADNtisCHPvTGACT-CQPGWSG-HHCNES-CPVGYYgdG 332 C<-* C KIAA1781 333 C 333 SM00181: domain 8 of 17, from 332 to 364: score 17.1, E = 2.5 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+ + C+nG + C++ + C+C+ pG++g+ C KIAA1781 332 GCQlpcTCQNG-----ADCHsiTGGCtCA-PGFMGeVCA 364 SM00180: domain 7 of 16, from 337 to 376: score 10.9, E = 1.1 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy..g C C ++ +C++ tG C C p+ +G + C Ca G y+++ KIAA1781 337 CTCQ-----NgadCHSiTGGCT-CAPGFMG-EVCAVS-CAAGTYgpN 375 C<-* C KIAA1781 376 C 376 SM00181: domain 9 of 17, from 375 to 407: score 19.8, E = 0.38 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C++ C nG GtC + +C+C+ +G++g C KIAA1781 375 NCSsicSCNNG-----GTCSpvDGSCtCK-EGWQGlDCT 407 SM00180: domain 8 of 16, from 380 to 419: score 12.8, E = 0.78 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C Cn +G+C p +G C Ck++ +G C C G ++ +C KIAA1781 380 CSCN---NGGtCSPvDGSCT-CKEGWQG-LDCTLP-CPSGTWglNC 419 -* KIAA1781 - - SM00181: domain 10 of 17, from 418 to 450: score 19.3, E = 0.55 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C ++ C nG + C + +C+C pG+ g++Ce KIAA1781 418 NCNescTCANG-----AACSpiDGSCsCT-PGWLGdTCE 450 SM00180: domain 9 of 16, from 423 to 462: score 4.5, E = 3.7 *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC C C + G C p +G C C p+ G + C+ C +G ++ +C KIAA1781 423 CTC----ANGaaCSPiDGSCS-CTPGWLG-DTCELP-CPDGTFglNC 462 <-* KIAA1781 - - SM00181: domain 11 of 17, from 461 to 493: score 6.2, E = 73 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+++ +Cs+ C + + +C C +G+tg rC KIAA1781 461 NCSehcDCSHAD-----GCDpvTGHCcCL-AGWTGiRCD 493 SM00180: domain 10 of 16, from 466 to 505: score 20.3, E = 0.19 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy..g CdC+ + ++Cdp tG+C C + tG rCd C pG ++++ KIAA1781 466 CDCS-----HadgCDPvTGHCC-CLAGWTG-IRCDS-TCPPGRWgpN 504 C<-* C KIAA1781 505 C 505 SM00181: domain 12 of 17, from 504 to 536: score 20.6, E = 0.22 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+ + C+nG G C ++ +C+C+ pG++g+ C+ KIAA1781 504 NCSvscSCENG-----GSCSpeDGSCeCA-PGFRGpLCQ 536 SM00180: domain 11 of 16, from 509 to 548: score 22.3, E = 0.066 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C C +G+C p++G C+ C p+ G + C + C pG+y++gC KIAA1781 509 CSCE---NGGsCSPeDGSCE-CAPGFRG-PLCQRI-CPPGFYghGC 548 -* KIAA1781 - - SM00181: domain 13 of 17, from 547 to 581: score 15.1, E = 10 *->eCa.pCsnGgtEqnGtCi.........sytC.CpgpGytg.rCe<-* Ca+pC C++++++ ++ s C+C pG++g C KIAA1781 547 GCAqPCP--------LCVhssrpchhiSGICeCL-PGFSGaLCN 581 SM00180: domain 12 of 16, from 551 to 593: score 3.7, E = 4.3 *->CdCnl.pppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC +C+l + ++ +C+ +G C+ C p+ G C++ Ca Gy++++C KIAA1781 551 -PCPLcVHSSRpCHHiSGICE-CLPGFSG-ALCNQV-CAGGYFgqDC 593 <-* KIAA1781 - - SM00181: domain 14 of 17, from 592 to 624: score 21.4, E = 0.12 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* +Ca+ C n+ GtC + +C+C pG++g+ C KIAA1781 592 DCAqlcSCANN-----GTCSpiDGSCqCF-PGWIGkDCS 624 SM00180: domain 13 of 16, from 597 to 636: score 19.2, E = 0.24 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C C G+C p +G C+ C p+ +G C ++ C pG++++ C KIAA1781 597 CSCA---NNGtCSPiDGSCQ-CFPGWIG-KDCSQA-CPPGFWgpAC 636 -* KIAA1781 - - SM00181: domain 15 of 17, from 635 to 667: score 15.0, E = 11 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C + C+nG + C + C+C pG+tg C KIAA1781 635 ACFhacSCHNG-----ASCSaeDGAChCT-PGWTGlFCT 667 SM00180: domain 14 of 16, from 640 to 679: score 14.0, E = 0.63 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy..g C C+ ++ +C ++G C+ C p+ tG C + rC +++++ KIAA1781 640 CSCH-----NgasCSAeDGACH-CTPGWTG-LFCTQ-RCPAAFFgkD 678 C<-* C KIAA1781 679 C 679 SM00181: domain 16 of 17, from 678 to 710: score 21.5, E = 0.12 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* +C + C+nG + C + s +C+C+ G+tg++Ce KIAA1781 678 DCGrvcQCQNG-----ASCDhiSGKCtCR-TGFTGqHCE 710 SM00180: domain 15 of 16, from 683 to 722: score 30.1, E = 0.0003 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy..g C+C ++ +Cd +G C C+ + tG ++C++ rCapG ++ g KIAA1781 683 CQCQ-----NgasCDHiSGKCT-CRTGFTG-QHCEQ-RCAPGTFgyG 721 C<-* C KIAA1781 722 C 722 SM00181: domain 17 of 17, from 721 to 753: score 15.4, E = 7.9 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C++ C n+ tC + + tC C pG++g rC KIAA1781 721 GCQqlcECMNNS-----TCDhvTGTCyCS-PGFKGiRCD 753 SM00180: domain 16 of 16, from 726 to 755: score 1.7, E = 6.2 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyygC< C+C ++++Cd tG C C p+ G rCd++ KIAA1781 726 CECM-----NnstCDHvTGTCY-CSPGFKG-IRCDQA--------- 755 -* KIAA1781 - 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