hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12371140/chunk_1/iprscan-20080502-12371140.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1781 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07974.3.ls EGF-like domain 250.3 3.6e-72 16 PF00008.17.fs EGF-like domain 246.4 5.6e-71 26 PF07974.3.fs EGF-like domain 245.2 1.2e-70 22 PF00008.17.ls EGF-like domain 205.2 1.4e-58 16 PF00053.14.fs Laminin EGF-like (Domains III and V) 176.6 1.6e-50 16 PF00053.14.ls Laminin EGF-like (Domains III and V) 126.7 5.8e-35 12 PF01414.9.fs Delta serrate ligand 67.7 4.5e-20 14 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00053.14.ls 1/12 76 115 .. 1 59 [] 12.0 0.0013 PF00053.14.ls 2/12 119 158 .. 1 59 [] 9.6 0.0023 PF00053.14.fs 2/16 123 147 .. 6 42 .. 21.3 1.6e-05 PF00008.17.ls 4/16 158 188 .. 1 38 [] 21.4 0.0031 PF07974.3.ls 4/16 162 188 .. 1 37 [] 23.2 0.00085 PF00053.14.ls 3/12 205 244 .. 1 59 [] 16.3 0.00047 PF00053.14.fs 4/16 208 242 .. 5 50 .. 15.4 0.00083 PF00008.17.ls 6/16 244 274 .. 1 38 [] 20.6 0.0051 PF07974.3.ls 6/16 248 274 .. 1 37 [] 22.9 0.0011 PF00053.14.ls 4/12 248 288 .. 1 59 [] 9.3 0.0024 PF00053.14.fs 5/16 248 276 .. 1 42 [. 19.0 7.6e-05 PF00053.14.ls 5/12 292 333 .. 1 59 [] 13.8 0.00086 PF07974.3.ls 9/16 380 406 .. 1 37 [] 23.7 0.00061 PF00053.14.ls 7/12 380 423 .. 1 59 [] 12.4 0.0012 PF00053.14.ls 9/12 509 552 .. 1 59 [] 14.5 0.00072 PF07974.3.ls 13/16 597 623 .. 1 37 [] 21.4 0.0029 PF00053.14.ls 10/12 597 636 .. 1 59 [] 13.9 0.00084 PF07974.3.ls 14/16 640 666 .. 1 37 [] 20.6 0.0053 PF00053.14.ls 11/12 640 683 .. 1 59 [] 8.5 0.0029 PF00053.14.ls 12/12 685 726 .. 1 59 [] 14.1 0.00079 PF00053.14.fs 15/16 687 726 .. 6 59 .] 18.6 0.0001 Alignments of top-scoring domains: PF00053.14.ls: domain 1 of 12, from 76 to 115: score 12.0, E = 0.0013 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C+C + + C++ +tG+C+ C ++ G rC++ C+pG KIAA1781 76 CQCQNGA-----LCNP-------ITGACV-CAAGFRGWRCEElCAPG 109 yyglpsgdpgqgC<-* ++g gC KIAA1781 110 THGK-------GC 115 PF00053.14.ls: domain 2 of 12, from 119 to 158: score 9.6, E = 0.0023 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C+C hG ++Cd+ + G+Cl C p++tG C++ C pG KIAA1781 119 CQC-RHG----ASCDP-------RAGECL-CAPGYTGVYCEElCPPG 152 yyglpsgdpgqgC<-* + + + C KIAA1781 153 SH-----GAH--C 158 PF00053.14.fs: domain 2 of 16, from 123 to 147: score 21.3, E = 1.6e-05 *->hGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr<-* hG ++Cd+ + G+Cl C p++tG C++ KIAA1781 123 HG----ASCDP-------RAGECL-CAPGYTGVYCEE 147 PF00008.17.ls: domain 4 of 16, from 158 to 188: score 21.4, E = 0.0031 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C pC+ngGtC+ + +C CppG +tG C KIAA1781 158 CELRC-PCQNGGTCHHI--TGECACPPG----WTGAVC 188 PF07974.3.ls: domain 4 of 16, from 162 to 188: score 23.2, E = 0.00085 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C++ +GtC+ +g C C++g ++Ga C KIAA1781 162 CpCQN-GGTCHHI------TGECACPPG----WTGAVC 188 PF00053.14.ls: domain 3 of 12, from 205 to 244: score 16.3, E = 0.00047 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrC.drCkpG C C++ G +Cd +tGqC+ C +++G+rC+++C G KIAA1781 205 CPCHHGG-----QCDH-------VTGQCH-CTAGYMGDRCqEECPFG 238 yyglpsgdpgqgC<-* +g+ +C KIAA1781 239 SFGF-------QC 244 PF00053.14.fs: domain 4 of 16, from 208 to 242: score 15.4, E = 0.00083 *->phGslsddtCdsddelfgeetGqClkCkpnvtGrrC.drCkpGyygl +hG ++Cd +tGqC+ C +++G+rC+++C G +g+ KIAA1781 208 HHG----GQCDH-------VTGQCH-CTAGYMGDRCqEECPFGSFGF 242 <-* KIAA1781 - - PF00008.17.ls: domain 6 of 16, from 244 to 274: score 20.6, E = 0.0051 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* Cs+ C+ngG+C +t + CeC pG y+G+rC KIAA1781 244 CSQRC-DCHNGGQCSPT--TGACECEPG----YKGPRC 274 PF07974.3.ls: domain 6 of 16, from 248 to 274: score 22.9, E = 0.0011 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C++ +G+C + +g C+C++g y G+ C KIAA1781 248 CdCHN-GGQCSPT------TGACECEPG----YKGPRC 274 PF00053.14.ls: domain 4 of 12, from 248 to 288: score 9.3, E = 0.0024 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr..Ckp CdC++ G +C + tG+C C p++ G+rC ++ C + KIAA1781 248 CDCHNGG-----QCSP-------TTGACE-CEPGYKGPRCQErlCPE 281 GyyglpsgdpgqgC<-* G + +pg C KIAA1781 282 GLH-----GPG--C 288 PF00053.14.fs: domain 5 of 16, from 248 to 276: score 19.0, E = 7.6e-05 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr<-* CdC++ G +C + tG+C C p++ G+rC + KIAA1781 248 CDCHNGG-----QCSP-------TTGACE-CEPGYKGPRCQE 276 PF00053.14.ls: domain 5 of 12, from 292 to 333: score 13.8, E = 0.00086 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C C+ + s C++ +tG+C C+p+ +G +C+++C G KIAA1781 292 CPCDADNTIS---CHP-------VTGACT-CQPGWSGHHCNEsCPVG 327 yyglpsgdpgqgC<-* yyg+ gC KIAA1781 328 YYGD-------GC 333 PF07974.3.ls: domain 9 of 16, from 380 to 406: score 23.7, E = 0.00061 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+Cn+ +GtC p+ g C C+ g +qG dC KIAA1781 380 CsCNN-GGTCS-PV-----DGSCTCKEG----WQGLDC 406 PF00053.14.ls: domain 7 of 12, from 380 to 423: score 12.4, E = 0.0012 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C Cn+ G tC + + G C Ck++ +G +C +C G KIAA1781 380 CSCNNGG-----TCSP-------VDGSCT-CKEGWQGLDCTLpCPSG 413 yyglpsgdpgqgC<-* ++gl + ++C KIAA1781 414 TWGL---NCNESC 423 PF00053.14.ls: domain 9 of 12, from 509 to 552: score 14.5, E = 0.00072 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C C + G +C + e G C C p++ G+ C r C pG KIAA1781 509 CSCENGG-----SCSP-------EDGSCE-CAPGFRGPLCQRiCPPG 542 yyglpsgdpgqgC<-* +yg + +q C KIAA1781 543 FYGH---GCAQPC 552 PF07974.3.ls: domain 13 of 16, from 597 to 623: score 21.4, E = 0.0029 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C + +GtC g C+C +g + G+dC KIAA1781 597 CsCAN-NGTCSPI------DGSCQCFPG----WIGKDC 623 PF00053.14.ls: domain 10 of 12, from 597 to 636: score 13.9, E = 0.00084 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C C ++G tC + + G C+ C p+ G++C + C pG KIAA1781 597 CSCANNG-----TCSP-------IDGSCQ-CFPGWIGKDCSQaCPPG 630 yyglpsgdpgqgC<-* ++ +p+ C KIAA1781 631 FW-----GPA--C 636 PF07974.3.ls: domain 14 of 16, from 640 to 666: score 20.6, E = 0.0053 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C++ + C g C+C++g ++G C KIAA1781 640 CsCHN-GASCSAE------DGACHCTPG----WTGLFC 666 PF00053.14.ls: domain 11 of 12, from 640 to 683: score 8.5, E = 0.0029 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrC.drCkpG C C++ + +C e G+C+ C p+ tG C+ rC KIAA1781 640 CSCHNGA-----SCSA-------EDGACH-CTPGWTGLFCtQRCPAA 673 yyglpsgdpgqgC<-* ++g d g+ C KIAA1781 674 FFGK---DCGRVC 683 PF00053.14.ls: domain 12 of 12, from 685 to 726: score 14.1, E = 0.00079 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCd.rCkpG C+ +G ++Cd ++G C C+ ++tG++C++rC+pG KIAA1781 685 CQ---NG----ASCDH-------ISGKCT-CRTGFTGQHCEqRCAPG 716 yyglpsgdpgqgC<-* ++g+ + q C KIAA1781 717 TFGY---GCQQLC 726 PF00053.14.fs: domain 15 of 16, from 687 to 726: score 18.6, E = 0.0001 *->hGslsddtCdsddelfgeetGqClkCkpnvtGrrCd.rCkpGyyglp +G ++Cd ++G C C+ ++tG++C++rC+pG++g+ KIAA1781 687 NG----ASCDH-------ISGKCT-CRTGFTGQHCEqRCAPGTFGY- 720 sgdpgqgC<-* + q C KIAA1781 721 --GCQQLC 726 //