hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12352853/chunk_1/iprscan-20080502-12352853.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1780 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00181 331.4 6.1e-95 17 SM00180 258.3 6.3e-73 14 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00181 1/17 160 188 .. 1 32 [] 21.4 0.13 SM00181 2/17 199 231 .. 1 32 [] 21.3 0.13 SM00180 1/14 204 243 .. 1 42 [] 21.9 0.089 SM00181 3/17 242 274 .. 1 32 [] 25.3 0.0086 SM00180 2/14 247 286 .. 1 42 [] 19.5 0.22 SM00181 4/17 285 317 .. 1 32 [] 22.5 0.06 SM00181 5/17 328 360 .. 1 32 [] 23.1 0.039 SM00180 3/14 333 372 .. 1 42 [] 36.1 4.8e-06 SM00181 6/17 371 403 .. 1 32 [] 21.1 0.16 SM00180 4/14 376 416 .. 1 42 [] 20.0 0.2 SM00181 7/17 415 449 .. 1 32 [] 9.6 36 SM00180 5/14 420 461 .. 1 42 [] 32.5 5.9e-05 SM00181 8/17 460 492 .. 1 32 [] 21.1 0.16 SM00180 6/14 465 504 .. 1 42 [] 14.6 0.55 SM00181 9/17 503 535 .. 1 32 [] 19.6 0.43 SM00180 7/14 508 547 .. 1 42 [] 11.5 1 SM00181 10/17 546 578 .. 1 32 [] 19.9 0.35 SM00180 8/14 551 590 .. 1 42 [] 14.7 0.55 SM00181 11/17 589 621 .. 1 32 [] 13.4 17 SM00180 9/14 594 633 .. 1 42 [] 27.9 0.0014 SM00181 12/17 632 664 .. 1 32 [] 23.7 0.027 SM00180 10/14 637 680 .. 1 42 [] 10.7 1.1 SM00181 13/17 675 709 .. 1 32 [] 10.7 29 SM00180 11/14 683 721 .. 1 42 [] 6.6 2.5 SM00181 14/17 720 752 .. 1 32 [] 19.9 0.36 SM00181 15/17 763 795 .. 1 32 [] 16.5 3.7 SM00180 12/14 768 807 .. 1 42 [] 16.1 0.42 SM00181 16/17 806 838 .. 1 32 [] 25.2 0.0093 SM00180 13/14 811 850 .. 1 42 [] 25.9 0.0058 SM00181 17/17 849 881 .. 1 32 [] 17.2 2.3 SM00180 14/14 854 885 .. 1 42 [] 0.3 8 Alignments of top-scoring domains: SM00181: domain 1 of 17, from 160 to 188: score 21.4, E = 0.13 *->eCa.pCsnGgtEqnGtCi.sytC.CpgpGytg.rCe<-* Ca+ C +G +Ci tC+C pG+ g++C KIAA1780 160 HCAdKCVHG------RCIaPNTCqCE-PGWGGtNCS 188 SM00181: domain 2 of 17, from 199 to 231: score 21.3, E = 0.13 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C ++ C nG + C + + C+C+ +G++g rCe KIAA1780 199 HCTsrcQCKNG-----ALCNpiTGAChCA-AGFRGwRCE 231 SM00180: domain 1 of 14, from 204 to 243: score 21.9, E = 0.089 *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC C+C G C+p tG C+ C + G rC+d rC+ G y+++C KIAA1780 204 CQC----KNGalCNPiTGACH-CAAGFRG-WRCED-RCEQGTYgnDC 243 <-* KIAA1780 - - SM00181: domain 3 of 17, from 242 to 274: score 25.3, E = 0.0086 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* +C+++ C+nG +tC + + +C+Cp pGytg Ce KIAA1780 242 DCHqrcQCQNG-----ATCDhvTGECrCP-PGYTGaFCE 274 SM00180: domain 2 of 14, from 247 to 286: score 19.5, E = 0.22 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy..g C+C ++ +Cd tG C+ C p++tG C+d C pG +++ KIAA1780 247 CQCQ-----NgatCDHvTGECR-CPPGYTG-AFCED-LCPPGKHgpQ 285 C<-* C KIAA1780 286 C 286 SM00181: domain 4 of 17, from 285 to 317: score 22.5, E = 0.06 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+++ pC+nG G+C++ + +C+Cp G++g+ C KIAA1780 285 QCEqrcPCQNG-----GVCHhvTGECsCP-SGWMGtVCG 317 SM00181: domain 5 of 17, from 328 to 360: score 23.1, E = 0.039 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+++ C+nG GtC + +C+C pGytg+rC+ KIAA1780 328 NCSqecQCHNG-----GTCDaaTGQChCS-PGYTGeRCQ 360 SM00180: domain 3 of 14, from 333 to 372: score 36.1, E = 4.8e-06 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C+C+ +G+Cd tGqC+ C p++tG +rC de C G y+ C KIAA1780 333 CQCH---NGGtCDAaTGQCH-CSPGYTG-ERCQDE-CPVGTYgvLC 372 -* KIAA1780 - - SM00181: domain 6 of 17, from 371 to 403: score 21.1, E = 0.16 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* Ca++ C nG G+C + s C C +G+ g+rCe KIAA1780 371 LCAetcQCVNG-----GKCYhvSGAClCE-AGFAGeRCE 403 SM00180: domain 4 of 14, from 376 to 416: score 20.0, E = 0.2 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C+C +G+C+ +G Cl C + +G +rC++ C +G y+ C KIAA1780 376 CQCV---NGGkCYHvSGACL-CEAGFAG-ERCEARLCPEGLYgiKC 416 -* KIAA1780 - - SM00181: domain 7 of 17, from 415 to 449: score 9.6, E = 36 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+++ pC+ t C++ s +C C+ pG++g +C KIAA1780 415 KCDkrcPCHLENT---HSCHpmSGECaCK-PGWSGlYCN 449 SM00180: domain 5 of 14, from 420 to 461: score 32.5, E = 5.9e-05 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy..g C+C+ ++++C+p +G C Ckp+ G C+ e C pG+y++ KIAA1780 420 CPCH---LENthsCHPmSGECA-CKPGWSG-LYCN-ETCSPGFYgeA 460 C<-* C KIAA1780 461 C 461 SM00181: domain 8 of 17, from 460 to 492: score 21.1, E = 0.16 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C++ C+nG + C + + +C+C+ pG++g C KIAA1780 460 ACQqicSCQNG-----ADCDsvTGKCtCA-PGFKGiDCS 492 SM00180: domain 6 of 14, from 465 to 504: score 14.6, E = 0.55 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy..g C C ++ +Cd+ tG C C p+ G C C G y+ + KIAA1780 465 CSCQ-----NgadCDSvTGKCT-CAPGFKG-IDCSTP-CPLGTYgiN 503 C<-* C KIAA1780 504 C 504 SM00181: domain 9 of 17, from 503 to 535: score 19.6, E = 0.43 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+++ +C n+ ++C + +C+C+ +G++g C KIAA1780 503 NCSsrcGCKND-----AVCSpvDGSCtCK-AGWHGvDCS 535 SM00180: domain 7 of 14, from 508 to 547: score 11.5, E = 1 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy..g C C ++ C p +G C Ck + G C rC G ++ g KIAA1780 508 CGCK-----NdavCSPvDGSCT-CKAGWHG-VDCSI-RCPSGTWgfG 546 C<-* C KIAA1780 547 C 547 SM00181: domain 10 of 17, from 546 to 578: score 19.9, E = 0.35 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C + C nG G C + tC+C+ pG++g+ Ce KIAA1780 546 GCNltcQCLNG-----GACNtlDGTCtCA-PGWRGeKCE 578 SM00180: domain 8 of 14, from 551 to 590: score 14.7, E = 0.55 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C+C +G C+ +G C C p+ G ++C+ C++G y+ +C KIAA1780 551 CQCL---NGGaCNTlDGTCT-CAPGWRG-EKCELP-CQDGTYglNC 590 -* KIAA1780 - - SM00181: domain 11 of 17, from 589 to 621: score 13.4, E = 17 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* Ca++ +Cs+ C++++ +C+C pG++g +C KIAA1780 589 NCAercDCSHAD-----GCHptTGHCrCL-PGWSGvHCD 621 SM00180: domain 9 of 14, from 594 to 633: score 27.9, E = 0.0014 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy..g CdC+ + ++C+p+tG+C+ C p+ G +Cd Ca+G ++++ KIAA1780 594 CDCS-----HadgCHPtTGHCR-CLPGWSG-VHCDSV-CAEGRWgpN 632 C<-* C KIAA1780 633 C 633 SM00181: domain 12 of 17, from 632 to 664: score 23.7, E = 0.027 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+ + C nG + C ++ C+C+ pG++g++C+ KIAA1780 632 NCSlpcYCKNG-----ASCSpdDGICeCA-PGFRGtTCQ 664 SM00180: domain 10 of 14, from 637 to 680: score 10.7, E = 1.1 *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy.... C C G +C p++G C+ C p+ G C + C pG+y+++ KIAA1780 637 CYC----KNGasCSPdDGICE-CAPGFRG-TTCQRI-CSPGFYghrc 676 ..gC<-* +++C KIAA1780 677 sqTC 680 SM00181: domain 13 of 17, from 675 to 709: score 10.7, E = 29 *->eCa....pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+++ + C + G C++ + C+C pG+tg C KIAA1780 675 RCSqtcpQCVHSS----GPCHhiTGLCdCL-PGFTGaLCN 709 SM00180: domain 11 of 14, from 683 to 721: score 6.6, E = 2.5 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C + ++G+C+ tG C+ C p+ tG C++ C G ++++C KIAA1780 683 CV-H---SSGpCHHiTGLCD-CLPGFTG-ALCNEV-CPSGRFgkNC 721 -* KIAA1780 - - SM00181: domain 14 of 17, from 720 to 752: score 19.9, E = 0.36 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* Ca+ C n+ GtC + +C+C pG++g+ C KIAA1780 720 NCAgicTCTNN-----GTCNpiDRSCqCY-PGWIGsDCS 752 SM00181: domain 15 of 17, from 763 to 795: score 16.5, E = 3.7 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C ++ C+nG + C +C+C pG+tg +C KIAA1780 763 NCIhtcNCHNG-----AFCSayDGECkCT-PGWTGlYCT 795 SM00180: domain 12 of 14, from 768 to 807: score 16.1, E = 0.42 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy..g C+C+ ++ C +G C C p+ tG C + rC G+y+++ KIAA1780 768 CNCH-----NgafCSAyDGECK-CTPGWTG-LYCTQ-RCPLGFYgkD 806 C<-* C KIAA1780 807 C 807 SM00181: domain 16 of 17, from 806 to 838: score 25.2, E = 0.0093 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* +Ca C+nG + C + s +C+C+ G++g++Ce KIAA1780 806 DCAlicQCQNG-----ADCDhiSGQCtCR-TGFMGrHCE 838 SM00180: domain 13 of 14, from 811 to 850: score 25.9, E = 0.0058 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy..g C+C ++ +Cd +GqC C+ + +G r+C++ +C G y+ g KIAA1780 811 CQCQ-----NgadCDHiSGQCT-CRTGFMG-RHCEQ-KCPSGTYgyG 849 C<-* C KIAA1780 850 C 850 SM00181: domain 17 of 17, from 849 to 881: score 17.2, E = 2.3 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C + +C n+ tC + + tC C pG++g rC KIAA1780 849 GCRqicDCLNNS-----TCDhiTGTCyCS-PGWKGaRCD 881 SM00180: domain 14 of 14, from 854 to 885: score 0.3, E = 8 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyygC< CdC ++++Cd tG C C p+ G rCd++ g KIAA1780 854 CDCL-----NnstCDHiTGTCY-CSPGWKG-ARCDQA-------GV 885 -* KIAA1780 - - //