hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12352853/chunk_1/iprscan-20080502-12352853.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1780 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07974.3.ls EGF-like domain 278.0 1.7e-80 17 PF07974.3.fs EGF-like domain 270.3 3.6e-78 22 PF00008.17.fs EGF-like domain 258.6 1.2e-74 24 PF00008.17.ls EGF-like domain 208.9 1.1e-59 17 PF00053.14.fs Laminin EGF-like (Domains III and V) 171.6 4.4e-49 15 PF07546.3.ls EMI domain 118.5 1.8e-32 1 PF07546.3.fs EMI domain 117.4 3.8e-32 4 PF01414.9.fs Delta serrate ligand 98.6 1.7e-29 19 PF00053.14.ls Laminin EGF-like (Domains III and V) 105.8 1.1e-28 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07546.3.ls 1/1 82 154 .. 1 84 [] 118.5 1.8e-32 PF07546.3.fs 1/4 82 154 .. 1 84 [] 116.6 6.4e-32 PF00053.14.fs 1/15 204 247 .. 1 59 [] 15.5 0.0008 PF00053.14.ls 1/11 204 247 .. 1 59 [] 17.2 0.00039 PF00008.17.ls 3/17 243 273 .. 1 38 [] 19.9 0.0084 PF07974.3.ls 3/17 247 273 .. 1 37 [] 23.4 0.00073 PF07974.3.ls 4/17 290 316 .. 1 37 [] 22.0 0.0019 PF00008.17.ls 5/17 329 359 .. 1 38 [] 21.0 0.004 PF07974.3.fs 7/22 333 359 .. 1 37 [] 26.9 1.6e-06 PF00053.14.fs 4/15 333 369 .. 1 49 [. 21.3 1.7e-05 PF07974.3.ls 5/17 333 359 .. 1 37 [] 28.6 2e-05 PF00053.14.ls 2/11 333 372 .. 1 59 [] 16.8 0.00043 PF00053.14.ls 4/11 420 461 .. 1 59 [] 15.1 0.00063 PF00053.14.fs 6/15 420 458 .. 1 49 [. 18.0 0.00014 PF00053.14.ls 8/11 594 633 .. 1 59 [] 14.0 0.00082 PF00053.14.ls 9/11 637 680 .. 1 59 [] 8.0 0.0033 PF00053.14.fs 12/15 686 710 .. 9 42 .. 16.6 0.00038 PF07974.3.ls 15/17 768 794 .. 1 37 [] 21.6 0.0027 PF00053.14.ls 11/11 811 854 .. 1 59 [] 21.5 0.00014 PF00053.14.fs 14/15 811 854 .. 1 59 [] 19.8 4.5e-05 Alignments of top-scoring domains: PF07546.3.ls: domain 1 of 1, from 82 to 154: score 118.5, E = 1.8e-32 *->grNvCayqevsryvvtvlesgsetfvqryytpCawpqpserhfiCsg ++NvC+++e +y+vtv+es+ ++f+q yyt+C +++++ f+C++ KIAA1780 82 DPNVCSHWE--SYSVTVQESYPHPFDQIYYTSCTDILNW---FKCTR 123 yEvrvsYRtayRpvyrtkyktvTslvwrCCPGysgsd<-* +rvsYRtayR+ ++t+y+ + +CCPG+++s+ KIAA1780 124 --HRVSYRTAYRHGEKTMYR----RKSQCCPGFYESG 154 PF07546.3.fs: domain 1 of 4, from 82 to 154: score 116.6, E = 6.4e-32 *->grNvCayqevsryvvtvlesgsetfvqryytpCawpqpserhfiCsg ++NvC+++e +y+vtv+es+ ++f+q yyt+C +++++ f+C++ KIAA1780 82 DPNVCSHWE--SYSVTVQESYPHPFDQIYYTSCTDILNW---FKCTR 123 yEvrvsYRtayRpvyrtkyktvTslvwrCCPGysgsd<-* +rvsYRtayR+ ++t+y+ + +CCPG+++s+ KIAA1780 124 --HRVSYRTAYRHGEKTMYR----RKSQCCPGFYESG 154 PF00053.14.fs: domain 1 of 15, from 204 to 247: score 15.5, E = 0.0008 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrC.drCkpG C+C + + C++ +tG+C+ C ++ G rC+drC+ G KIAA1780 204 CQCKNGA-----LCNP-------ITGACH-CAAGFRGWRCeDRCEQG 237 yyglpsgdpgqgC<-* +yg+ d +q C KIAA1780 238 TYGN---DCHQRC 247 PF00053.14.ls: domain 1 of 11, from 204 to 247: score 17.2, E = 0.00039 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrC.drCkpG C+C + + C++ +tG+C+ C ++ G rC+drC+ G KIAA1780 204 CQCKNGA-----LCNP-------ITGACH-CAAGFRGWRCeDRCEQG 237 yyglpsgdpgqgC<-* +yg+ d +q C KIAA1780 238 TYGN---DCHQRC 247 PF00008.17.ls: domain 3 of 17, from 243 to 273: score 19.9, E = 0.0084 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C++ C+ng+tC + + +C+CppG ytG +C KIAA1780 243 CHQRC-QCQNGATCDHV--TGECRCPPG----YTGAFC 273 PF07974.3.ls: domain 3 of 17, from 247 to 273: score 23.4, E = 0.00073 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C++ + tC+ + +g C C++g y+Ga C KIAA1780 247 CqCQN-GATCD--HV----TGECRCPPG----YTGAFC 273 PF07974.3.ls: domain 4 of 17, from 290 to 316: score 22.0, E = 0.0019 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C++ +G+C+ + +g C+C+sg + G C KIAA1780 290 CpCQN-GGVCH--HV----TGECSCPSG----WMGTVC 316 PF00008.17.ls: domain 5 of 17, from 329 to 359: score 21.0, E = 0.004 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* Cs++ C+ngGtC + +C+C pG ytG+rC KIAA1780 329 CSQEC-QCHNGGTCDAA--TGQCHCSPG----YTGERC 359 PF07974.3.fs: domain 7 of 22, from 333 to 359: score 26.9, E = 1.6e-06 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C++ +GtC+ +g+C+C++g y+G C KIAA1780 333 CqCHN-GGTCDAA------TGQCHCSPG----YTGERC 359 PF00053.14.fs: domain 4 of 15, from 333 to 369: score 21.3, E = 1.7e-05 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrC.drCkpG C+C++ G tCd tGqC+ C p++tG+rC+d+C G KIAA1780 333 CQCHNGG-----TCDA-------ATGQCH-CSPGYTGERCqDECPVG 366 yyg<-* +yg KIAA1780 367 TYG 369 PF07974.3.ls: domain 5 of 17, from 333 to 359: score 28.6, E = 2e-05 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C++ +GtC+ +g+C+C++g y+G C KIAA1780 333 CqCHN-GGTCDAA------TGQCHCSPG----YTGERC 359 PF00053.14.ls: domain 2 of 11, from 333 to 372: score 16.8, E = 0.00043 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrC.drCkpG C+C++ G tCd tGqC+ C p++tG+rC+d+C G KIAA1780 333 CQCHNGG-----TCDA-------ATGQCH-CSPGYTGERCqDECPVG 366 yyglpsgdpgqgC<-* +y + C KIAA1780 367 TY-----GVL--C 372 PF00053.14.ls: domain 4 of 11, from 420 to 461: score 15.1, E = 0.00063 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C C++ ++s C++ ++G+C Ckp+ +G C+++C pG KIAA1780 420 CPCHLENTHS---CHP-------MSGECA-CKPGWSGLYCNEtCSPG 455 yyglpsgdpgqgC<-* +y + + C KIAA1780 456 FY-----GEA--C 461 PF00053.14.fs: domain 6 of 15, from 420 to 458: score 18.0, E = 0.00014 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C C++ ++s C++ ++G+C Ckp+ +G C+++C pG KIAA1780 420 CPCHLENTHS---CHP-------MSGECA-CKPGWSGLYCNEtCSPG 455 yyg<-* +yg KIAA1780 456 FYG 458 PF00053.14.ls: domain 8 of 11, from 594 to 633: score 14.0, E = 0.00082 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCd.rCkpG CdC+ h+ d C++ tG+C+ C+p+ +G +Cd+ C++G KIAA1780 594 CDCS-HA----DGCHP-------TTGHCR-CLPGWSGVHCDsVCAEG 627 yyglpsgdpgqgC<-* + +p C KIAA1780 628 RW-----GPN--C 633 PF00053.14.ls: domain 9 of 11, from 637 to 680: score 8.0, E = 0.0033 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C C + + +C + G C C p++ G+ C r C pG KIAA1780 637 CYCKNGA-----SCSP-------DDGICE-CAPGFRGTTCQRiCSPG 670 yyglpsgdpgqgC<-* +yg q C KIAA1780 671 FYGH---RCSQTC 680 PF00053.14.fs: domain 12 of 15, from 686 to 710: score 16.6, E = 0.00038 *->lsddtCdsddelfgeetGqClkCkpnvtGrrCdr<-* +s + C+ +tG C+ C+p++tG C++ KIAA1780 686 SS-GPCHH-------ITGLCD-CLPGFTGALCNE 710 PF07974.3.ls: domain 15 of 17, from 768 to 794: score 21.6, E = 0.0027 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C++ + C g C+C++g ++G +C KIAA1780 768 CnCHN-GAFCSAY------DGECKCTPG----WTGLYC 794 PF00053.14.ls: domain 11 of 11, from 811 to 854: score 21.5, E = 0.00014 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C+C + + +Cd ++GqC C+ +++Gr+C+++C G KIAA1780 811 CQCQNGA-----DCDH-------ISGQCT-CRTGFMGRHCEQkCPSG 844 yyglpsgdpgqgC<-* +yg+ + +q C KIAA1780 845 TYGY---GCRQIC 854 PF00053.14.fs: domain 14 of 15, from 811 to 854: score 19.8, E = 4.5e-05 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C+C + + +Cd ++GqC C+ +++Gr+C+++C G KIAA1780 811 CQCQNGA-----DCDH-------ISGQCT-CRTGFMGRHCEQkCPSG 844 yyglpsgdpgqgC<-* +yg+ + +q C KIAA1780 845 TYGY---GCRQIC 854 //