hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12334660/chunk_1/iprscan-20080502-12334660.nocrc
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Query sequence: KIAA1779
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00091                                                  50.6      2e-10   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00091    1/2     139   211 ..     1    68 []    15.8      2.5
SM00091    2/2     286   352 ..     1    68 []    34.8  1.2e-05

Alignments of top-scoring domains:
SM00091: domain 1 of 2, from 139 to 211: score 15.8, E = 2.5
                   *->erlrailes.....lpdgiivld.ldGrilyaNpaaeellGyspeel
                      e+l++i + ++++++++++ v + l Gr +++++ a+ +l++ ++ l
    KIAA1779   139    EELATIASEhtsknTDTFVAVFSfLSGRLVHISEQAALILNRKKDVL 185  

                   iGksllelihpedrlleevqe.lqrlla<-*
                      ++ +l+ p+d+    + ++  r++    
    KIAA1779   186 ASSHFVDLLAPQDM--RVFYAhTARAQL    211  

SM00091: domain 2 of 2, from 286 to 352: score 34.8, E = 1.2e-05
                   *->erlraileslpdgiivldldGrilyaNpaaeellGyspeeliGksll
                       +  +i  +   +   +++   +l+++++a  llGy p++liG+s+l
    KIAA1779   286    YEAPRIPVNKRIFTTTHTPGCVFLEVDEKAVPLLGYLPQDLIGTSIL 332  

                   elihpedrlleevqe.lqrlla<-*
                    ++hpedr    + + +q++l+   
    KIAA1779   333 SYLHPEDR--SLMVAiHQKVLK    352  

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