hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12334660/chunk_1/iprscan-20080502-12334660.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1779
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08447.1.fs PAS fold                                        60.2    5.8e-16   1
PF08447.1.ls PAS fold                                        62.2    1.6e-15   1
PF00989.14.fs PAS fold                                        25.2    4.1e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00989.14.fs   1/1     307   401 ..    24   123 .]    25.2  4.1e-07
PF08447.1.fs   1/1     308   404 ..     1   100 []    60.2  5.8e-16
PF08447.1.ls   1/1     308   404 ..     1   100 []    62.2  1.6e-15

Alignments of top-scoring domains:
PF00989.14.fs: domain 1 of 1, from 307 to 401: score 25.2, E = 4.1e-07
                   *->rilyvNaaaeellGlsreeviGkslldlipeeddaeclvaelllqal
                      ++l+v ++a  llG+ ++++iG s+l ++++ed++   ++++ +++l
    KIAA1779   307    VFLEVDEKAVPLLGYLPQDLIGTSILSYLHPEDRSL--MVAIHQKVL 351  

                   eqgeergvevsfrvsgqrflvrdgrpihvevraspvrdaggeil.gflgv
                   +  ++  +e+s +++++    ++g +i ++  +s +++++++ ++ ++g+
    KIAA1779   352 KYAGHPPFEHSPIRFCT----QNGDYIILDSSWSSFVNPWSRKIsFIIGR 397  

                   lrDi<-*
                   ++ +   
    KIAA1779   398 HKVR    401  

PF08447.1.fs: domain 1 of 1, from 308 to 404: score 60.2, E = 5.8e-16
                   *->iiywsprfeeilGYspeellgkssyedwldlvHPdDrervrealqea
                      ++ +++    +lGY p++l+g+s    +l+++HP+Dr ++ + +q++
    KIAA1779   308    FLEVDEKAVPLLGYLPQDLIGTS----ILSYLHPEDRSLMVAIHQKV 350  

                   lklkkgepysg.eyRirrkdGeyrWveargrvirrDenGkpvrviGvavD
                   lk ++  p++++  R+ +++G+y+ ++++ + + + ++ k+ ++iG +++
    KIAA1779   351 LKYAGHPPFEHsPIRFCTQNGDYIILDSSWSSFVNPWSRKISFIIGRHKV 400  

                   ITer<-*
                    T     
    KIAA1779   401 RTSP    404  

PF08447.1.ls: domain 1 of 1, from 308 to 404: score 62.2, E = 1.6e-15
                   *->iiywsprfeeilGYspeellgkssyedwldlvHPdDrervrealqea
                      ++ +++    +lGY p++l+g+s    +l+++HP+Dr ++ + +q++
    KIAA1779   308    FLEVDEKAVPLLGYLPQDLIGTS----ILSYLHPEDRSLMVAIHQKV 350  

                   lklkkgepysg.eyRirrkdGeyrWveargrvirrDenGkpvrviGvavD
                   lk ++  p++++  R+ +++G+y+ ++++ + + + ++ k+ ++iG +++
    KIAA1779   351 LKYAGHPPFEHsPIRFCTQNGDYIILDSSWSSFVNPWSRKISFIIGRHKV 400  

                   ITer<-*
                    T     
    KIAA1779   401 RTSP    404  

//