# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/pg00707.fasta.huge -Q ../query/KIAA1778.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1778, 341 aa vs ./tmplib.25089 library 1987164 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.2725+/-0.00748; mu= 10.3676+/- 0.510 mean_var=199.1823+/-46.265, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.090876 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1317 ( 435 res) fh13117 ( 435) 599 90.2 2.1e-19 KIAA0176 ( 265 res) ha03941 ( 265) 197 37.2 0.0012 >>KIAA1317 ( 435 res) fh13117 (435 aa) initn: 1086 init1: 515 opt: 599 Z-score: 440.1 bits: 90.2 E(): 2.1e-19 Smith-Waterman score: 1033; 56.291% identity (73.841% similar) in 302 aa overlap (42-341:24-286) 20 30 40 50 60 70 KIAA17 GHLSVMALADSTRGLPNGGGGGGGSGSSSSSAEPPLFPDIVELNVGGQVYVTRRCTVVSV :: : ::..:::::::::: ::. :..:. KIAA13 QQQKKGTMALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLISI 10 20 30 40 50 80 90 100 110 120 KIAA17 PDSLLWRMFTQQQP--QELARDSKGRFFLDRDGFLFRYILDYLRDLQLVLPDYFPERSRL : ::::.::. .. ..::.:::::::.:::::::::::::::: :.::::.:::..:: KIAA13 PHSLLWKMFSPKRDTANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRL 60 70 80 90 100 110 130 140 150 160 170 180 KIAA17 QREAEYFELPELVRRLGAPQQPGPGPPPSRRGVHKEGSLGDELLPLGYSEPEQQEGASAG .::::::.::.::. : .:.. .: ::. . : :: : KIAA13 KREAEYFQLPDLVKLL-TPDEIKQSP--------------DEFCHSDF------EDASQG 120 130 140 150 190 200 210 220 230 240 KIAA17 APSPTLELASRSPSGGAAGPLLTPSQSLDGSRRSGYITIGYRGSYTIGRDAQADAKFRRV . . : . ::. : ..:. :.::.::::: :.::..::::::::: KIAA13 SDT-------R---------ICPPSSLLPADRKWGFITVGYRGSCTLGREGQADAKFRRV 160 170 180 190 250 260 270 280 290 300 KIAA17 ARITVCGKTSLAKEVFGDTLNESRDPDRPPERYTSRYYLKFNFLEQAFDKLSESGFHMVA :: :::. ::::::::.:::::::::: :::::::.::::. ::.::: ::: :::::: KIAA13 PRILVCGRISLAKEVFGETLNESRDPDRAPERYTSRFYLKFKHLERAFDMLSECGFHMVA 200 210 220 230 240 250 310 320 330 340 KIAA17 CSSTGTCAFASSTDQSEDKIWTSYTEYVFCRE :.:. : .: . . ..::::.::::::: :: KIAA13 CNSSVTASFIN--QYTDDKIWSSYTEYVFYREPSRWSPSHCDCCCKNGKGDKEGESGTSC 260 270 280 290 300 310 KIAA13 NDLSTSSCDSQSEASSPQETVICGPVTRQTNIQTLDRPIKKGPVQLIQQSEMRRKSDLLR 320 330 340 350 360 370 >>KIAA0176 ( 265 res) ha03941 (265 aa) initn: 244 init1: 94 opt: 197 Z-score: 157.4 bits: 37.2 E(): 0.0012 Smith-Waterman score: 200; 35.000% identity (59.167% similar) in 120 aa overlap (25-143:62-167) 10 20 30 40 50 KIAA17 VQRGFLPLSRPGHLSVMALADSTRGLPNGGGGGGGSGSSSSSAEPPLFPDIVEL : :. .::::.. :.: KIAA01 GPPSPRPAGPTPRGHGRPAAAVAQRLEPGPGPPERAGGGGAA-------------RWVRL 40 50 60 70 60 70 80 90 100 110 KIAA17 NVGGQVYVTRRCTVVSVPDSLLWRMFTQQQPQ-ELARDSKGRFFLDRDGFLFRYILDYLR :::: .:: : :. : :.: :. :..:. . .: : ...::: : ::.::: KIAA01 NVGGTYFVTTRQTLGREPKSFLCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPILNYLR 80 90 100 110 120 130 120 130 140 150 160 170 KIAA17 DLQLVLPDYFPERSRLQREAEYFELPELVRRLGAPQQPGPGPPPSRRGVHKEGSLGDELL .:.. . :.. :. :::.... ::: KIAA01 HGKLIITKELAEEGVLE-EAEFYNIASLVRLVKERIRDNENRTSQGPVKHVYRVLQCQEE 140 150 160 170 180 190 341 residues in 1 query sequences 1987164 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:16:40 2008 done: Thu Dec 18 15:16:40 2008 Total Scan time: 0.360 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]