hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12301636/chunk_1/iprscan-20080502-12301636.nocrc
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Query sequence: KIAA1777
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00209                                                  97.2      2e-24   2
SM00218                                                  85.0    8.9e-21   1
SM00005                                                  54.9      1e-11   1
SM00409                                                  44.0      2e-08   1
SM00408                                                  43.4    2.9e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/1     166   251 ..     1    58 []    44.0    2e-08
SM00408    1/1     172   239 ..     1    56 []    43.4  2.9e-08
SM00209    1/2     256   307 ..     1    66 []    58.6  8.3e-13
SM00209    2/2     312   361 ..     1    66 []    38.6  8.3e-07
SM00218    1/1     541   643 ..     1   115 []    85.0  8.9e-21
SM00005    1/1     848   939 ..     1   108 []    54.9    1e-11

Alignments of top-scoring domains:
SM00409: domain 1 of 1, from 166 to 251: score 44.0, E = 2e-08
                   *->pp.vtvkeGesvtLtC.as......titWy.................
                      p++ +v   + ++L+C+ + + +  ++ W+++  + ++ ++ + +++
    KIAA1777   166    PQgREVPIEGMIVLHCrPPegvpaaEVEWLkneepidseqdenidtr 212  

                   ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                    +++L+I++++++Ds   G+YtC+a +   +  s  ++t+ V+   
    KIAA1777   213 adhnLIIrQARLSDS---GNYTCMAAniVAKRRS-LSATVVVY    251  

SM00408: domain 1 of 1, from 172 to 239: score 43.4, E = 2.9e-08
                   *->leGqsVtLtCp.asgdpvpnItWlk.gkplp..........sgstLt
                       + + ++L C++ +g p++++ Wlk+++p++++++++ +++ +  L 
    KIAA1777   172    PIEGMIVLHCRpPEGVPAAEVEWLKnEEPIDseqdenidtrADHNLI 218  

                   iknvsleDsGlYtCvArNsvg<-*
                   i+ ++l+DsG+YtC A N v    
    KIAA1777   219 IRQARLSDSGNYTCMAANIVA    239  

SM00209: domain 1 of 2, from 256 to 307: score 58.6, E = 8.3e-13
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      ws+W+eWS+C  v CG+G     +++R+R+    c +p+p    ngg
    KIAA1777   256    WSSWTEWSACN-VRCGRG-----WQKRSRT----CTNPAP---LNGG 289  

                   epCs....EtrpCntqpnLqpCp<-*
                   + C++ + ++ +C+       Cp   
    KIAA1777   290 AFCEgmsvQKITCTS-----LCP    307  

SM00209: domain 2 of 2, from 312 to 361: score 38.6, E = 8.3e-07
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w  WseWS CS   C           R R+    c  ppp   +ngg
    KIAA1777   312    WEVWSEWSVCS-PEC--------EHLRIRE----CTAPPP---RNGG 342  

                   epCs....EtrpCntqpnLqpCp<-*
                   + C++ ++E++ C+       C    
    KIAA1777   343 KFCEglsqESENCTDG----LCI    361  

SM00218: domain 1 of 1, from 541 to 643: score 85.0, E = 8.9e-21
                   *->psflvsgtvdsrGGrLrgprHsGvrliiPpgAipqGtryecYlvvhk
                      +     g ++ +GGrL  p+ +Gv+l+iP gAip+    e+Y  +++
    KIAA1777   541    TELRTTGVFGHLGGRLVMPN-TGVSLLIPHGAIPEENSWEIYMSINQ 586  

                   klstpPPLDkeegEtLLSPvvecGPCDVSmSAhGalllrPViLevpHCAs
                    +   P L   ++E LLSP v+cGP       ++ + + P  L++pHCA+
    KIAA1777   587 GE---PSLQSDGSEVLLSPEVTCGP-------PDMIVTTPFALTIPHCAD 626  

                   lrprdkwelvllrsengg<-*
                   ++ +  w + l++   +g   
    KIAA1777   627 VSSEH-WNIHLKKRTQQG    643  

SM00005: domain 1 of 1, from 848 to 939: score 54.9, E = 1e-11
                   *->pagaaslteltreklaklldhpldlgddWreLArkLglseaeidqie
                      ++ a++++  +r++++   d p+ +g+dW+ LA+k+ +  +++ +++
    KIAA1777   848    GPKAFKIPYSIRQRICATFDTPNAKGKDWQMLAQKNSI-NRNLSYFA 893  

                   tesprelnAyyeddlreqsyqlLrlWeqregkneqatlgtLleaLrkmgr
                   t+s+             +s ++L+lWe+r+  +  + l+ L+ aL+++gr
    KIAA1777   894 TQSS-------------PSAVILNLWEARHQHD--GDLDSLACALEEIGR 928  

                   ddavellrsel<-*
                    +   +  se+   
    KIAA1777   929 THTKLSNISES    939  

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