hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12301636/chunk_1/iprscan-20080502-12301636.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1777 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00791.10.fs ZU5 domain 84.4 2.1e-23 1 PF00791.10.ls ZU5 domain 84.5 2.9e-22 1 PF00090.9.fs Thrombospondin type 1 domain 57.3 1.3e-16 2 PF00531.12.fs Death domain 60.0 8.4e-16 1 PF00531.12.ls Death domain 61.9 1.9e-15 1 PF00090.9.ls Thrombospondin type 1 domain 61.1 3.5e-15 2 PF07679.6.fs Immunoglobulin I-set domain 35.9 7.3e-10 1 PF00047.15.fs Immunoglobulin domain 32.8 3.1e-08 1 PF00047.15.ls Immunoglobulin domain 34.7 3e-07 1 PF07679.6.ls Immunoglobulin I-set domain 32.6 1.3e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.ls 1/1 160 250 .. 1 96 [] 32.6 1.3e-06 PF00047.15.fs 1/1 174 234 .. 1 65 [] 32.8 3.1e-08 PF00047.15.ls 1/1 174 234 .. 1 65 [] 34.7 3e-07 PF07679.6.fs 1/1 185 250 .. 25 96 .] 35.9 7.3e-10 PF00090.9.ls 1/2 257 306 .. 1 55 [] 37.3 4.9e-08 PF00090.9.fs 1/2 257 306 .. 1 55 [] 35.4 5.3e-10 PF00090.9.ls 2/2 313 360 .. 1 55 [] 23.8 8.2e-05 PF00090.9.fs 2/2 313 360 .. 1 55 [] 21.9 6.1e-06 PF00791.10.ls 1/1 541 643 .. 1 107 [] 84.5 2.9e-22 PF00791.10.fs 1/1 547 643 .. 7 107 .] 84.4 2.1e-23 PF00531.12.fs 1/1 860 937 .. 1 87 [] 60.0 8.4e-16 PF00531.12.ls 1/1 860 937 .. 1 87 [] 61.9 1.9e-15 Alignments of top-scoring domains: PF07679.6.ls: domain 1 of 1, from 160 to 250: score 32.6, E = 1.3e-06 *->PkFtqkpkdveVqeGesarfeCk.VtGtPePtVsWfKdGqplssvll F+q p+ eV + +++ C++ +G P +V+W+K+ +p+ s KIAA1777 160 KNFEQDPQGREVPIEGMIVLHCRpPEGVPAAEVEWLKNEEPIDS--- 203 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNs.aGeaeasaeLt ++ +++ + ++ L+I+++ +DsG YtC A N a + + sa++ KIAA1777 204 -EQDENIDTRA---DHNLIIRQARLSDSGNYTCMAANIvAKRRSLSATVV 249 V<-* V KIAA1777 250 V 250 PF00047.15.fs: domain 1 of 1, from 174 to 234: score 32.8, E = 3.1e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq +++ L C+ +g p ++v Wl+n ++ ++++ ++++ + KIAA1777 174 EGMIVLHCRPP-EGVPAAEVEWLKNEEpIDsEQDENIDTRADHN--- 216 tsLtitnvtpeDggtYtCvv<-* L i++++ +D+g+YtC++ KIAA1777 217 --LIIRQARLSDSGNYTCMA 234 PF00047.15.ls: domain 1 of 1, from 174 to 234: score 34.7, E = 3e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq +++ L C+ +g p ++v Wl+n ++ ++++ ++++ + KIAA1777 174 EGMIVLHCRPP-EGVPAAEVEWLKNEEpIDsEQDENIDTRADHN--- 216 tsLtitnvtpeDggtYtCvv<-* L i++++ +D+g+YtC++ KIAA1777 217 --LIIRQARLSDSGNYTCMA 234 PF07679.6.fs: domain 1 of 1, from 185 to 250: score 35.9, E = 7.3e-10 *->tGtPePtVsWfKdGqplssvllpsdrfkvtydgGsgtytLtIsnvqp +G P +V+W+K+ +p+ s ++ +++ + ++ L+I+++ KIAA1777 185 EGVPAAEVEWLKNEEPIDS----EQDENIDTRA---DHNLIIRQARL 224 dDsGkYtCvAtNs.aGeaeasaeLtV<-* +DsG YtC A N a + + sa++ V KIAA1777 225 SDSGNYTCMAANIvAKRRSLSATVVV 250 PF00090.9.ls: domain 1 of 2, from 257 to 306: score 37.3, E = 4.9e-08 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s W+eWS+C+V CG G + R R+c +paP gg++C+g ++ KIAA1777 257 SSWTEWSACNVRCGRGWQKRSRTCTNPAPL-NGGAFCEGMSVQ--KI 300 aCdmmdkC<-* C C KIAA1777 301 TC--TSLC 306 PF00090.9.fs: domain 1 of 2, from 257 to 306: score 35.4, E = 5.3e-10 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s W+eWS+C+V CG G + R R+c +paP gg++C+g ++ KIAA1777 257 SSWTEWSACNVRCGRGWQKRSRTCTNPAPL-NGGAFCEGMSVQ--KI 300 aCdmmdkC<-* C C KIAA1777 301 TC--TSLC 306 PF00090.9.ls: domain 2 of 2, from 313 to 360: score 23.8, E = 8.2e-05 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +WseWS CS C R+R c +p+P+ gg++C+g qe +e KIAA1777 313 EVWSEWSVCSPECEH---LRIRECTAPPPR-NGGKFCEGLSQE--SE 353 aCdmmdkC<-* C + C KIAA1777 354 NC-TDGLC 360 PF00090.9.fs: domain 2 of 2, from 313 to 360: score 21.9, E = 6.1e-06 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +WseWS CS C R+R c +p+P+ gg++C+g qe +e KIAA1777 313 EVWSEWSVCSPECEH---LRIRECTAPPPR-NGGKFCEGLSQE--SE 353 aCdmmdkC<-* C + C KIAA1777 354 NC-TDGLC 360 PF00791.10.ls: domain 1 of 1, from 541 to 643: score 84.5, E = 2.9e-22 *->tsflvsgtfdarGGsLrgprHtGVsiiIPpgaipqgtrytcylvkhk t g f+ +GG+L p+ tGVs++IP gaip+ ++y +++ KIAA1777 541 TELRTTGVFGHLGGRLVMPN-TGVSLLIPHGAIPEENSWEIYMSINQ 586 kestpPPlDkeegetLlSpiVecGPtGalFlrPViLevPHcAslrpkewe e P l ++e LlSp V+cGP++ + P L++PHcA+++ + w KIAA1777 587 GE---PSLQSDGSEVLLSPEVTCGPPDMIVTTPFALTIPHCADVSSEHWN 633 lvlLrsdngg<-* + l++ +g KIAA1777 634 IHLKKRTQQG 643 PF00791.10.fs: domain 1 of 1, from 547 to 643: score 84.4, E = 2.1e-23 *->gtfdarGGsLrgprHtGVsiiIPpgaipqgtrytcylvkhkkestpP g f+ +GG+L p+ tGVs++IP gaip+ ++y +++ e P KIAA1777 547 GVFGHLGGRLVMPN-TGVSLLIPHGAIPEENSWEIYMSINQGE---P 589 PlDkeegetLlSpiVecGPtGalFlrPViLevPHcAslrpkewelvlLrs l ++e LlSp V+cGP++ + P L++PHcA+++ + w + l++ KIAA1777 590 SLQSDGSEVLLSPEVTCGPPDMIVTTPFALTIPHCADVSSEHWNIHLKKR 639 dngg<-* +g KIAA1777 640 TQQG 643 PF00531.12.fs: domain 1 of 1, from 860 to 937: score 60.0, E = 8.4e-16 *->eklcallDpdellgkdWkeLArkLglseneIdeiesdenpgdlrspt +++ca +D ++ gkdW+ LA+k+ + ++ + ++ + ++ sp+ KIAA1777 860 QRICATFDTPNAKGKDWQMLAQKNSI-NRNLSYFAT-QS-----SPS 899 yeLLrlWeqrhGknatvgtLleaLrklgrrdaaellesal<-* +L+lWe+rh +++++ L++aL+++gr ++ +l +++ KIAA1777 900 AVILNLWEARHQHDGDLDSLACALEEIGRTHT--KLSNIS 937 PF00531.12.ls: domain 1 of 1, from 860 to 937: score 61.9, E = 1.9e-15 *->eklcallDpdellgkdWkeLArkLglseneIdeiesdenpgdlrspt +++ca +D ++ gkdW+ LA+k+ + ++ + ++ + ++ sp+ KIAA1777 860 QRICATFDTPNAKGKDWQMLAQKNSI-NRNLSYFAT-QS-----SPS 899 yeLLrlWeqrhGknatvgtLleaLrklgrrdaaellesal<-* +L+lWe+rh +++++ L++aL+++gr ++ +l +++ KIAA1777 900 AVILNLWEARHQHDGDLDSLACALEEIGRTHT--KLSNIS 937 //