# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh19201x1.fasta.huge -Q ../query/KIAA1777.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1777, 954 aa vs ./tmplib.25089 library 1986551 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.3510+/-0.00528; mu= 20.6550+/- 0.358 mean_var=109.8232+/-26.768, 0's: 0 Z-trim: 20 B-trim: 0 in 0/40 Lambda= 0.122385 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0550 ( 1524 res) hh15909 (1524) 355 74.7 9.6e-14 KIAA1568 ( 1380 res) fh22308 (1380) 337 71.5 8.2e-13 KIAA1445 ( 1202 res) fg03469b (1202) 304 65.5 4.3e-11 KIAA2036 ( 1322 res) pf06513 (1322) 296 64.2 1.2e-10 KIAA2029 ( 1021 res) pj01256 (1021) 226 51.7 5.6e-07 KIAA0688 ( 849 res) hk03410 ( 849) 205 47.8 6.6e-06 KIAA1346 ( 999 res) fj00671 ( 999) 199 46.9 1.5e-05 KIAA1976 ( 351 res) fg02988 ( 351) 193 45.1 1.8e-05 KIAA0366 ( 1201 res) hh00124 (1201) 191 45.6 4.4e-05 KIAA0762 ( 724 res) hk04668s1 ( 724) 181 43.5 0.00011 KIAA0230 ( 1496 res) ha02538 (1496) 166 41.3 0.0011 KIAA1312 ( 1471 res) fh11767 (1471) 165 41.1 0.0012 KIAA1679 ( 1536 res) fh22954 (1536) 162 40.6 0.0017 KIAA1496 ( 920 res) fj09513 ( 920) 159 39.8 0.0019 KIAA0960 ( 1502 res) hj05779s1 (1502) 149 38.3 0.0085 >>KIAA0550 ( 1524 res) hh15909 (1524 aa) initn: 350 init1: 153 opt: 355 Z-score: 338.6 bits: 74.7 E(): 9.6e-14 Smith-Waterman score: 355; 42.276% identity (61.789% similar) in 123 aa overlap (242-360:336-454) 220 230 240 250 260 270 KIAA17 RADHNLIIRQARLSDSGNYTCMAANIVAKRRSLSATVVVYVNGGWSSWTEWSACNVRCGR : . :.. :.: : :. :: :. ::: KIAA05 SVTCGQGSQVRTRTCVSPYGTHCSGPLRESRVCNNTALCPVHGVWEEWSPWSLCSFTCGR 310 320 330 340 350 360 280 290 300 310 320 KIAA17 GWQKRSRTCTNPAPLNGGAFCEGMSVQKITCT-SLCPVDGSWEVWSEWSVCSPECEH--- : . :.:.:: : : :: ::: ... :. .::::::.:. :: :: :: : . KIAA05 GQRTRTRSCT-P-PQYGGRPCEGPETHHKPCNIALCPVDGQWQEWSSWSQCSVTCSNGTQ 370 380 390 400 410 420 330 340 350 360 370 380 KIAA17 LRIRECTAPPPRNGGKFCEGLSQESENCTDGLCILDKKPLHEIKPQSIENASDIALYSGL : :.::: .::. :.: ::..: . : KIAA05 QRSRQCTAAA--HGGSECRGPWAESRECYNPECTANGQWNQWGHWSGCSKSCDGGWERRI 430 440 450 460 470 480 390 400 410 420 430 440 KIAA17 GAAVVAVAVLVIGVTLYRRSQSDYGVDVIDSSALTGGFQTFNFKTVRQGNSLLLNSAMQP KIAA05 RTCQGAVITGQQCEGTGEEVRRCSEQRCPAPYEICPEDYLMSMVWKRTPAGDLAFNQCPL 490 500 510 520 530 540 >>KIAA1568 ( 1380 res) fh22308 (1380 aa) initn: 278 init1: 178 opt: 337 Z-score: 321.8 bits: 71.5 E(): 8.2e-13 Smith-Waterman score: 337; 33.005% identity (62.562% similar) in 203 aa overlap (55-251:33-224) 30 40 50 60 70 80 KIAA17 FLLDFSSQTSPGTDNGEALPESIPSAPGTLPHFIEEPDDAYIIKSNPIALRCKA--RPAM :...:.:.:. . :..: .: ::: ::. KIAA15 MSLLMFTQLLLCGFLYVRVDGSRLRQEDFPPRIVEHPSDVIVSKGEPTTLNCKAEGRPTP 10 20 30 40 50 60 90 100 110 120 130 KIAA17 QIFFKCNGEWVHQNEHVSEETLDESSGLKVREVFINVTRQQVEDFHG----PEDYWCQCV : :: ...:.: . : : : .. . . .. :: :.. :: KIAA15 TI------EWYKDGERVETDKDDPRSH---RMLLPSGSLFFLRIVHGRRSKPDEGSYVCV 70 80 90 100 110 140 150 160 170 180 190 KIAA17 AWSHLGTSKSRKASVRIAYLRKNFEQDPQGREVPIEGMIVLHCRPPEGVPAAEVEWLKNE : ..:: . ::.::...: :: .:.:.: : .:.:.::.: : . : :.. KIAA15 ARNYLGEAVSRNASLEVALLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYWKKDK 120 130 140 150 160 170 200 210 220 230 240 250 KIAA17 EPIDSEQDENIDTRADHNLIIRQARLSDSGNYTCMAANIVAKRRSLSATVVVYVNGGWSS :: ...: :. :. . :.: ..: ::.: :::...:.:..: : : ..:. KIAA15 VRID-DKEERISIRGGK-LMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLR 180 190 200 210 220 230 260 270 280 290 300 310 KIAA17 WTEWSACNVRCGRGWQKRSRTCTNPAPLNGGAFCEGMSVQKITCTSLCPVDGSWEVWSEW KIAA15 RPINQVVLEEEAVEFRCQVQGDPQPTVRWKKDDADLPRGRYDIKDDYTLRIKKTMSTDEG 240 250 260 270 280 290 >>KIAA1445 ( 1202 res) fg03469b (1202 aa) initn: 386 init1: 211 opt: 304 Z-score: 290.9 bits: 65.5 E(): 4.3e-11 Smith-Waterman score: 376; 36.986% identity (55.479% similar) in 146 aa overlap (228-369:879-1024) 200 210 220 230 240 250 KIAA17 EEPIDSEQDENIDTRADHNLIIRQARLSDSGNYTCMAANIVAKRRSLSATVVVYVNGGWS :. .: . .: ..: :.:::. KIAA14 FRFTCRAPLADPHGLQFGRRRTETRTCPADGSGSCDTDALVEDLLRSGSTSPHTVSGGWA 850 860 870 880 890 900 260 270 280 290 300 310 KIAA17 SWTEWSACNVRCGRGWQKRSRTCTNPAPLNGGAFCEGMSVQKITCT-SLCPVDGSWEVWS .: ::.:. : :.. :.:::::: : ::: : : ... :. . ::: :.: :. KIAA14 AWGPWSSCSRDCELGFRVRKRTCTNPEPRNGGLPCVGDAAEYQDCNPQACPVRGAWSCWT 910 920 930 940 950 960 320 330 340 350 360 370 KIAA17 EWSVCSPEC---EHLRIRECTAPPPRNGGKFCEGLSQESENCTDGLCILDKKPLHEIKPQ :: :: : .. : : ::.: : : .: :: : :. : .: : KIAA14 SWSPCSASCGGGHYQRTRSCTSPAPSPGEDICLGLHTEEALCATQACPEGWSPWSEWSKC 970 980 990 1000 1010 1020 380 390 400 410 420 430 KIAA17 SIENASDIALYSGLGAAVVAVAVLVIGVTLYRRSQSDYGVDVIDSSALTGGFQTFNFKTV KIAA14 TDDGAQSRSRHCEELLPGSSACAGNSSQSRPCPYSEIPVILPASSMEEATGCAGFNLIHL 1030 1040 1050 1060 1070 1080 >>KIAA2036 ( 1322 res) pf06513 (1322 aa) initn: 311 init1: 258 opt: 296 Z-score: 282.9 bits: 64.2 E(): 1.2e-10 Smith-Waterman score: 296; 37.931% identity (56.897% similar) in 116 aa overlap (254-360:703-815) 230 240 250 260 270 280 KIAA17 LSDSGNYTCMAANIVAKRRSLSATVVVYVNGGWSSWTEWSACNVRCGRGWQKRSRTCTNP :.:. :. :. :. :: : ::: :. : KIAA20 LTPLPPQVCDGQPDCGRPGQVGPSPEEQGCGAWGPWSPWGPCSRTCGPWGQGRSRRCS-P 680 690 700 710 720 730 290 300 310 320 330 340 KIAA17 APLNGGAFCEGMSVQKITC-TSLCPVDGSWEVWSEWSVCSPECE--HLRIRECTAPPPRN : : : :. .: :. ::::: : .:: ::::: :. : :.: .: .: KIAA20 LGLLVLQNCPGPEHQSQACFTAACPVDGEWSTWSPWSVCSEPCRGTMTRQRQCHSP--QN 740 750 760 770 780 350 360 370 380 390 KIAA17 GGKFCEGL------SQESENCTDGLCILDKKPLHEIKPQSIENASDIALYSGLGAAVVAV ::. : .: ..... : . : KIAA20 GGRTCAALPGGLHSTRQTKPCPQDGCPNATCSGELMFQPCAPCPLTCDDISGQVTCPPDW 790 800 810 820 830 840 >>KIAA2029 ( 1021 res) pj01256 (1021 aa) initn: 252 init1: 212 opt: 226 Z-score: 217.2 bits: 51.7 E(): 5.6e-07 Smith-Waterman score: 226; 50.000% identity (65.517% similar) in 58 aa overlap (253-309:383-440) 230 240 250 260 270 280 KIAA17 RLSDSGNYTCMAANIVAKRRSLSATVVVYVNGGWSSWTEWSACNVRCGRGWQKRSRTCTN .: ::.:. :: :. :: : ..::: ::: KIAA20 PAAEGTICGHDMWCRGGQCVKYGDEGPKPTHGHWSDWSSWSPCSRTCGGGVSHRSRLCTN 360 370 380 390 400 410 290 300 310 320 330 340 KIAA17 PAPLNGGAFCEGMSVQKITCTSL-CPVDGSWEVWSEWSVCSPECEHLRIRECTAPPPRNG : : .:: :::: . :.: :: : KIAA20 PKPSHGGKFCEGSTRTLKLCNSQKCPRDSVDFRAAQCAEHNSRRFRGRHYKWKPYTQVED 420 430 440 450 460 470 >>KIAA0688 ( 849 res) hk03410 (849 aa) initn: 255 init1: 195 opt: 205 Z-score: 197.9 bits: 47.8 E(): 6.6e-06 Smith-Waterman score: 205; 47.458% identity (62.712% similar) in 59 aa overlap (254-311:533-590) 230 240 250 260 270 280 KIAA17 LSDSGNYTCMAANIVAKRRSLSATVVVYVNGGWSSWTEWSACNVRCGRGWQKRSRTCTNP :::. : :. :. :: : : :: :: : KIAA06 DGTPCGPAQACMGGRCLHMDQLQDFNIPQAGGWGPWGPWGDCSRTCGGGVQFSSRDCTRP 510 520 530 540 550 560 290 300 310 320 330 340 KIAA17 APLNGGAFCEGMSVQKITC-TSLCPVDGSWEVWSEWSVCSPECEHLRIRECTAPPPRNGG .: ::: .::: .. .: : ::. :: KIAA06 VPRNGGKYCEGRRTRFRSCNTEDCPT-GSALTFREEQCAAYNHRTDLFKSFPGPMDWVPR 570 580 590 600 610 620 >>KIAA1346 ( 999 res) fj00671 (999 aa) initn: 198 init1: 123 opt: 199 Z-score: 191.5 bits: 46.9 E(): 1.5e-05 Smith-Waterman score: 199; 34.118% identity (57.647% similar) in 85 aa overlap (253-336:591-673) 230 240 250 260 270 280 KIAA17 RLSDSGNYTCMAANIVAKRRSLSATVVVYVNGGWSSWTEWSACNVRCGRGWQKRSRTCTN .:.:. : :. :. :: : : : : : KIAA13 ADGTSCGEGKWCINGKCVNKTDRKHFDTPFHGSWGMWGPWGDCSRTCGGGVQYTMRECDN 570 580 590 600 610 620 290 300 310 320 330 340 KIAA17 PAPLNGGAFCEGMSVQKITCT-SLCPVDGSWEVWSEWSVCSPECEHLRIRECTAPPPRNG :.: ::: .::: :. .:. :: :.. ... : . : . : . ..: KIAA13 PVPKNGGKYCEGKRVRYRSCNLEDCP-DNNGKTFREEQ-CEAHNEFSKASFGSGPAVEWI 630 640 650 660 670 350 360 370 380 390 400 KIAA17 GKFCEGLSQESENCTDGLCILDKKPLHEIKPQSIENASDIALYSGLGAAVVAVAVLVIGV KIAA13 PKYAGVSPKDRCKLICQAKGIGYFFVLQPKVVDGTPCSPDSTSVCVQGQCVKAGCDRIID 680 690 700 710 720 730 >>KIAA1976 ( 351 res) fg02988 (351 aa) initn: 324 init1: 174 opt: 193 Z-score: 190.1 bits: 45.1 E(): 1.8e-05 Smith-Waterman score: 306; 31.977% identity (60.465% similar) in 172 aa overlap (718-858:2-172) 690 700 710 720 730 740 KIAA17 AVKQLKVAVFGCMSCNSLDYNLRVYCVDNTPCAFQEVVSDERHQGGQLLEEPKLLHFKGN : :.::::. :.. ::::..::..:::: . KIAA19 PPGALQEVVQLEKQLGGQLIQEPRVLHFKDS 10 20 30 750 760 770 780 KIAA17 TFSLQISVLDIPPFLWRIK-----------------------PFTAC----QEVPFSRVW .:..:. :.: ::. : : :. ::.:: ..: KIAA19 YHNLRLSIHDVPSSLWKSKLLVSYQVRARAVASAQEAWSLGSPDTSSLQPHQEIPFYHIW 40 50 60 70 80 90 790 800 810 820 830 KIAA17 CSNRQPLHCAFSLERYTPTTTQLSCKICIRQLKGHEQILQVQTSILESE----RETITFF .... :::.:.::: .:.:..:.::. . :..: : .... .: . . : ..: : KIAA19 NGTQRYLHCTFTLERVSPSTSDLACKLWVWQVEGDGQSFSINFNITKVDGRGCRTAVTCF 100 110 120 130 140 150 840 850 860 870 880 890 KIAA17 AQEDSTFPAQTGPKAFKIPYSIRQRICATFDTPNAKGKDWQMLAQKNSINRNLSYFATQS . : : :..: .: .. KIAA19 HYQLPTSP-QNAPALPALPPTLPPACPQAHLLLETPWQLPPRLRDREAQVQMGLGEGSAG 160 170 180 190 200 210 >>KIAA0366 ( 1201 res) hh00124 (1201 aa) initn: 230 init1: 164 opt: 191 Z-score: 183.1 bits: 45.6 E(): 4.4e-05 Smith-Waterman score: 191; 23.757% identity (49.171% similar) in 181 aa overlap (127-304:429-598) 100 110 120 130 140 150 KIAA17 EHVSEETLDESSGLKVREVFINVTRQQVEDFHGPEDYWCQCVAWSHLGTSKSRKASVRIA :: . .: .: : .: KIAA03 VLGMEHDGQGNRCGDETAMGSVMAPLVQAAFH--RYHWSRCS-----GQELKRYIHSYDC 400 410 420 430 440 450 160 170 180 190 200 210 KIAA17 YLRKNFEQD-PQGREVP-IEGMIVLHCRPPEGVPAAEVEWLKNEEPIDSEQDENIDTRAD : :..: :. :.: :. . .:: :: ... .: . .. : KIAA03 LLDDPFDHDWPKLPELPGINYSMDEQCRFDFGVGYKMCTAFRTFDPCKQLW----CSHPD 460 470 480 490 500 220 230 240 250 260 270 KIAA17 HNLIIRQARLSDSGNYTCMAANIVAKRRSLSATVVVYV-NGGWSSWTEWSACNVRCGRGW . . . . . : :.. : . . .. .:.:.:::....:. :: : KIAA03 NPYFCKTKKGPPLDGTECAAGKWCYKGHCMWKNANQQKQDGNWGSWTKFGSCSRTCGTGV 510 520 530 540 550 560 280 290 300 310 320 330 KIAA17 QKRSRTCTNPAPLNGGAFCEGMSVQKITCTSLCPVDGSWEVWSEWSVCSPECEHLRIREC . :.: :.:: :.::: : :.. . :.. KIAA03 RFRTRQCNNPMPINGGQDCPGVNFEYQLCNTEECQKHFEDFRAQQCQQRNSHFEYQNTKH 570 580 590 600 610 620 340 350 360 370 380 390 KIAA17 TAPPPRNGGKFCEGLSQESENCTDGLCILDKKPLHEIKPQSIENASDIALYSGLGAAVVA KIAA03 HWLPYEHPDPKKRCHLYCQSKETGDVAYMKQLVHDGTHCSYKDPYSICVRGECVKVGCDK 630 640 650 660 670 680 >>KIAA0762 ( 724 res) hk04668s1 (724 aa) initn: 284 init1: 114 opt: 181 Z-score: 175.7 bits: 43.5 E(): 0.00011 Smith-Waterman score: 196; 23.043% identity (43.913% similar) in 230 aa overlap (138-361:425-638) 110 120 130 140 150 160 KIAA17 SGLKVREVFINVTRQQVEDFHGPEDYWCQCVAWSHLGTSKSRKASVRIAYLRKNFEQDPQ ..:: . : . : :. :.: .: . KIAA07 VPCPDTQDFQPCMGPGCSDEDGSTCTMSEWITWSPCSISCGMGMRSRERYV-KQFPEDGS 400 410 420 430 440 450 170 180 190 200 210 220 KIAA17 GREVPIEGM----IVLHCRPPEGVPAAEVEWLKNEEPIDSEQDENIDTRADHNLIIRQAR .: : . .: : . .:: . .: .. . : .: . KIAA07 VCTLPTEETEKCTVNEECSPSSCL---MTEWGEWDE---CSATCGMGMKKRHRMI----K 460 470 480 490 500 230 240 250 260 270 280 KIAA17 LSDSGNYTCMAANIVAKRRSLSATVVVYVNGGWSSWTEWSACNVRCGRGWQKRSRTCTNP .. . . : : . :.. . .. : :.::: :.: ::.: . :.: . KIAA07 MNPADGSMCKAETSQAEKCMMPECHTIPC--LLSPWSEWSDCSVTCGKGMRTRQRMLKSL 510 520 530 540 550 560 290 300 310 320 330 340 KIAA17 APLNGGAFCEGMSVQKITCTSLCPVDGSWEVWSEWSVCSPECE--HLRIRECTAPPPRNG : : : : . . ::.: ::.:: :. : :. . :. : KIAA07 AEL--GDCNEDLEQVEKCMLPECPIDCELTEWSQWSECNKSCGKGHVIRTRMIQMEPQFG 570 580 590 600 610 350 360 370 380 390 400 KIAA17 GKFCEGLSQESENCTDGLCILDKKPLHEIKPQSIENASDIALYSGLGAAVVAVAVLVIGV : : :. ..: :. KIAA07 GAPCPETVQR-KKCRIRKCLRNPSIQKLRWREARESRRSEQLKEESEGEQFPGCRMRPWT 620 630 640 650 660 670 954 residues in 1 query sequences 1986551 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:16:37 2008 done: Thu Dec 18 15:16:38 2008 Total Scan time: 0.650 Total Display time: 0.200 Function used was FASTA [version 34.26.5 April 26, 2007]