hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12260836/chunk_1/iprscan-20080502-12260836.nocrc
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Query sequence: KIAA1775
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 336.8    1.4e-96   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/6      56   132 ..     1   121 []    37.1  2.4e-06
SM00112    2/6     156   243 ..     1   121 []    82.0  7.2e-20
SM00112    3/6     267   350 ..     1   121 []    54.7  1.2e-11
SM00112    4/6     381   469 ..     1   121 []    54.4  1.5e-11
SM00112    5/6     493   573 ..     1   121 []    75.5  6.4e-18
SM00112    6/6     592   683 ..     1   121 []    33.1  3.9e-05

Alignments of top-scoring domains:
SM00112: domain 1 of 6, from 56 to 132: score 37.1, E = 2.4e-06
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils......lFsIdpetGtng
                      ++ tD+  +             ++Y+i+ ++++++ Fs+dp+ G+  
    KIAA1775    56    LNGTDPEGD------P------ISYHISFdpstrsVFSVDPTFGN-- 88   

                   psLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                            it++++LDRE           +e + ++  +Dg        
    KIAA1775    89 ---------ITLVEELDRERE---------DEIEAIISISDGL------- 113  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                    v++ V+D ND aP   
    KIAA1775   114 -----------NLVAEKVVILVTDANDEAP    132  

SM00112: domain 2 of 6, from 156 to 243: score 82.0, E = 7.2e-20
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL
                      v+A+D+D+g   + g       vtY + + +++F++d+++G      
    KIAA1775   156    VHAVDRDTG---SGGS------VTYFLQNlhsPFAVDRHSG------ 187  

                   vkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt
                       + + + ++LD+E            ++ +tv+A+DgGg   g++   
    KIAA1775   188 ---VLRLQAGATLDYERS---------RTHYITVVAKDGGGRLHGADVV- 224  

                   rksqqtpplsstatvtvtVlDvNDNaP<-*
                           +s+t+tvtv+V+Dv D aP   
    KIAA1775   225 --------FSATTTVTVNVEDVQDMAP    243  

SM00112: domain 3 of 6, from 267 to 350: score 54.7, E = 1.2e-11
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils....lFsIdpetGtngps
                      v+A D D g      +      + Ys+++++++ F+I++++G     
    KIAA1775   267    VVAMDGDRG---KPNR------ILYSLVNgndgAFEINETSG----- 299  

                   LvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssp
                          i++t++    ++         ++Y+L v++t + +        
    KIAA1775   300 ------AISITQSPAQLQR---------EVYELHVQVTEMSPAG------ 328  

                   trksqqtpplsstatvtvtVlDvNDNaP<-*
                         +p  ++t++vt++++D N ++P   
    KIAA1775   329 ------SPAAQATVPVTIRIVDLNNHPP    350  

SM00112: domain 4 of 6, from 381 to 469: score 54.4, E = 1.5e-11
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL
                      +++ D D+g    N+k      +  +++++++ F++ p+t  n +  
    KIAA1775   381    ITVNDSDQG---ANAK------FNLQLVGprgIFRVVPQTVLNEA-- 416  

                   vkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt
                     + ii+  ++++D+E+          ++ t++  A+  ++p +      
    KIAA1775   417 -QVTIIVENSAAIDFEKS---------KVLTFKLLAVEVNTPEK------ 450  

                   rksqqtpplsstatvtvtVlDvNDNaP<-*
                           +ssta v++++lD NDN P   
    KIAA1775   451 --------FSSTADVVIQLLDTNDNVP    469  

SM00112: domain 5 of 6, from 493 to 573: score 75.5, E = 6.4e-18
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils....lFsIdpetGtngps
                      v+A+D+D+g   + g+      v+Ys  +++ +lF I+p+tG     
    KIAA1775   493    VTAVDPDTG---PWGE------VKYSTYGtgadLFLIHPSTG----- 525  

                   Lvkleiiittt..kpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                          i+t++ ++LD E++         ++Y++ v+A D+ g      
    KIAA1775   526 ------LIYTQpwASLDAEAT---------ARYNFYVKAEDMEG------ 554  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                              + s a+v +t+lDvND++P   
    KIAA1775   555 -----------KYSVAEVFITLLDVNDHPP    573  

SM00112: domain 6 of 6, from 592 to 683: score 33.1, E = 3.9e-05
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      + A+D+D++  ++N        v Ysi+  ++ + F+I+++tG    
    KIAA1775   592    IEAIDEDAE--EPNNL------VDYSITHaepanVFDINSHTG---- 626  

                   sLvkleiiittt.kpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                        ei+++ + ++LD                +L+v+A+D+G+p+    
    KIAA1775   627 -----EIWLKNSiRSLDALHNITPGRD---CLWSLEVQAKDRGSPS---- 664  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                              +s+ta + + ++D         
    KIAA1775   665 -----------FSTTALLKIDITDAETLSR    683  

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